Continuity mistake: When Bart comes out of the water with the cooler, he doesn't have a shirt on. At no point does he put his shirt back on, it reappears when Lisa takes the food off everyone. (00:12:45)
Audio problem: When everyone runs towards the cooler on the next morning, they all cheer but their mouths don't move. (00:13:20)
Continuity mistake: Everyone discovers Milhouse ate the food so they walk up to him. The shot cuts and they are further away than they were in the previous shot. (00:13:50)
Continuity mistake: At the trial, Milhouse moves over to Lisa and Bart is in the middle of them. In the next shot, Bart has disappeared. (00:15:25)
Continuity mistake: At Milhouse's trial on the island, Milhouse moves to Lisa so he is at least a foot away from her. In the next shot, Milhouse and Lisa are standing right next to each other. (00:15:25)
Continuity mistake: When Bart, Lisa and Milhouse are running away from the others, the order is Bart, then Lisa, then Milhouse. In the next shot it is Lisa, then Bart, then Milhouse. (00:18:45)
Continuity mistake: Bart, Lisa and Milhouse run away from the others and are stopped by a cliff. Milhouse then grabs onto a vine which was never there in previous shots. (00:19:00)
Continuity mistake: When everyone is running out the cave after finding the boar, Wendell's skin is yellow instead of his usual pale white. (00:19:50)
Other mistake: When everyone is eating the boar at the end, the boar is completely intact, yet everyone except for Lisa is seen with a piece of it. (00:20:30)
Revealing mistake: When Skinner talks to Otto on the bus, the point of his hair is touching a pole. Look at the pole - Skinner's hair is going through it.
Continuity mistake: Whilst everyone is eating the boar, they are noticeably moving. But when it cuts the final wide shot, no-one is moving an inch.
Continuity mistake: When everyone discovers the monster is a boar, there is a Chippos packet on its tusk. But when the boar is shown licking the slime, the Chippos packet has disappeared without ever being touched.
Continuity mistake: When Milhouse swings across the vine, he lands on the ground and the vine isn't on the ground. Two shots later, the vine is suddenly on the ground.
Continuity mistake: Whilst running away from the others, Milhouse runs out of breath and falls over. In the shot where he is lands on the ground he has sweat on his face, but in the previous shot, no sweat was visible.
Other mistake: When Bart, Lisa and Milhouse run away from the others, Lisa steps right on a puddle but no splash or ripple is made.
Continuity mistake: Just before Homer meets Bill Gates, and during the meeting, the pens and pencils in the butter alternate between shots.
Continuity mistake: When Bart, Lisa and Milhouse first run away from the others and Nelson puts his fingers in the ash from the fire the night earlier, the twigs that remain in the fire disappear almost instantly.
Continuity mistake: Throughout the trial, the twins keep switching places between shots. Note - one twin has a bow in her hair and the other twin doesn't.
Continuity mistake: When Bart says "No talking in the cage", both him and Milhouse are right next to each other. But two shots after Lisa says Milhouse is the only witness, Milhouse is a good 10 foot away from Bart without ever having moved the cage he was in.
Answer: I'm not sure if this is the one you're thinking of, but an episode of "Ray Bradbury Theatre," called "A Sound of Thunder," dealt with a similar matter: a group of hunters travel back in time to hunt dinosaurs, only to find things have changed when they get back because someone stepped on a butterfly.
Xofer