The Bath Item Gift Hypothesis - S2-E11
Continuity mistake: When Sheldon emerges with all of the bath item gift baskets for Penny, he drops them on the floor and chair. Between shots one of the baskets on the chair changes from being an upright green-ribboned basket, to a toppled-over white-ribboned basket. (00:19:50)
The Lizard-Spock Expansion - S2-E8
Continuity mistake: When the guys are in the Mars Rover test room, the time displayed on the large digital clock seen behind Howard jumps about inconsistently between each shot. (00:07:50)
Continuity mistake: In the electronics store, when the man asks Sheldon which hard drive he should buy in the first shot he is holding the green box in his left hand. Next shot it is under his arm. (00:12:50)
The White Asparagus Triangulation - S2-E9
Continuity mistake: When Sheldon is in Penny's apartment trying to get her to tell him why her relationship with Leonard failed, the yellow tee-shirt on the red pillow next to him keeps changing position.
The Bat Jar Conjecture - S1-E13
Continuity mistake: At the end, when Leonard is gloating over beating Sheldon, his position on the sofa keeps changing in relation to the arm. (00:18:50)
The Grasshopper Experiment - S1-E8
Continuity mistake: When Raj's parents tell him to put his laptop down and gather his friends, they all huddle around the one-seat sofa. Sheldon is crouched to the left of the seat with his hands on the sidearm, yet in shots angled at the left he has disappeared from his place (as to not obstruct these particular angled shots.) (00:02:00)
The Benefactor Factor - S4-E15
Continuity mistake: When Sheldon and Leonard are in the kitchen discussing Leonard's upcoming night out with Mrs. Latham, there's a plastic bottle of orange juice on the table that keeps disappearing and reappearing as the camera switches between Sheldon and Leonard.
Suggested correction: The bottle is there every time, a few times because of the camera angle it is hidden by Sheldon.
The bottle of OJ is right next to a container of Coffee Mate, both items always visible when the bottle of OJ is present. When the OJ is not present, only the Coffee Mate is there, near enough the center of the table to not possibly be blocked out by either Sheldon nor Leonard.
No it is not right next to the coffee Mate, there is some distance with a phone in between. You can sometimes see the bottle behind Sheldon when he moves.
Continuity mistake: When Penny is telling Howard and Raj about Sheldon's "drug addicted cousin" her scarf keeps jumping in and out of her jacket.
The Barbarian Sublimation - S2-E3
Continuity mistake: When Penny sneaks into Sheldon's room at night to ask him about the online game, she leaves his bedroom door half open. But when she leaves, the door is shut. (00:07:35)
The Barbarian Sublimation - S2-E3
Continuity mistake: After Penny drops her bags of groceries whilst trying to unlock her door, the dropped items change their positions between shots (note the items against the wall.) (00:02:05)
The Cooper-Hofstadter Polarization - S1-E9
Continuity mistake: The video of the fight we see on Youtube is different to what we saw earlier in the episode.
The Vengeance Formulation - S3-E9
Continuity mistake: When Howard is proposing to Bernadette she is holding a tray with two glasses on it. The glasses are next to each other, side by side for two shots of her. Then in the third shot the glasses move so one is behind the other. Then in the fourth shot they are side by side again.
The White Asparagus Triangulation - S2-E9
Continuity mistake: When Sheldon, Raj and Howard are talking in the cafeteria, Sheldon's drink keeps moving position.
Continuity mistake: In nearly every episode, Sheldon demonstrates his OCD when he knocks three times on a door, says a person's name, and repeats that sequence twice, for a total of three iterations, but in this episode he radically departs from that behavior not once but twice. First, wanting to talk to Leonard, he knocks four times, says "Leonard" and repeats the sequence three times for a total of four iterations. Later, wanting to talk to Penny, he knocks four times and says her name, repeating that sequence at least four more times. Given that this was the first season, I assume the writers had not yet settled upon the 3x3 routine as a comic behavior.
The Grasshopper Experiment - S1-E8
Continuity mistake: When Raj is drinking with Lalita in the bar Penny works at, in one shot he raises his Grasshopper drink to his lips with his left hand. In the next shot it's in his right (this is just before he says "Oh my God, you've lost so much weight").
The Pancake Batter Anomaly - S1-E11
Continuity mistake: The way Penny holds her notepad when talking to Sheldon at the Cheesecake factory keeps changing instantly. (00:10:10)
The Habitation Configuration - S6-E7
Continuity mistake: When Wil first enters Fun with Flags, he has his flag partly on the table in front of him. In the next shot, the flag is not on the table at all.
The Comic Book Store Regeneration - S8-E15
Continuity mistake: While in Penny's apartment, Sheldon is folding laundry and Penny is talking to him from the kitchen counter. Between shots, the water bottle in front of Penny moves by itself to different spots on the counter.
The Retraction Reaction - S11-E2
Continuity mistake: Sheldon's formulae are written on three whiteboards. The marker color on the leftmost board is first red, later black. (00:07:05 - 00:09:21)
The Troll Manifestation - S8-E14
Continuity mistake: When the gang and Stephen Hawking are video chatting, the Android mascot is lying down when the camera is facing the gang, but when the camera is facing Stephen Hawking, the Android mascot is standing up.