
Plot hole: Scar tells the pack he didn't make it to the gorge in time to help Mufasa. However Zazu was with them at at the gorge. He could have easily told Sarabi or any of the other lions on the numerous times he spoke with them, exposing Scar.
Suggested correction: Actually, Zazu wouldn't honestly say that Scar was lying; he left Scar at the gorge, but for all he knows, when Scar talks about not getting to the gorge in time, Scar could just mean that he couldn't find a safe path into the gorge to help Mufasa and Simba escape.
Suggested correction: Zazu wasn't with them when Scar said so. He was with Rafiki. He couldn't have heard what Scar was saying.
Suggested correction: But it wouldn't have confirmed that he killed Mufasa.
It would prove that Scar (who had the most to gain from Mufasa and Simba's deaths) was lying about the circumstances surrounding their deaths. But no-one brings it up.
It would prove Scar is lying about the events of Mufasa's (and Simba's presumed) death, and given Scar gained the most from it, the other animals should be extremely suspicious of him.

Plot hole: The opaque red lined map that Otomo retrieves from his first fight is ridiculous. Why would people who know where the hidden base is be carrying around a map on them (which shows a route so basic that they'd have to be brain-dead not to be able to remember it anyway) just so that conveniently one of their enemies can get it?

Plot hole: When Charlie sets out to hijack the money train, he jumps off the platform onto the tracks as it arrives, in plain sight of the driver and other passengers at the station, and only puts his mask on once he's in position on the tracks. The train conveniently stops right over top of Charlie, allowing him to enter through the conveniently-placed grate on the train's floor. (01:17:15)

Plot hole: While it is essential to the story, there is a problem with apes in the space ship. While it is the one that took Taylor to the future, there is no way the chimps could have salvaged the ship from the water (plus there wasn't enough time for such a salvage operation. Kira and Cornelius were living in the ape city we see in "Beneath the Planet of the Apes" never mentioning to Brent that they found a spaceship he could travel back with). They didn't have the technology for such an operation, no diving suits, and chimps are scared of water. Also, the water would have destroyed the power systems of the ship when it sank. (00:00:25)

Plot hole: The letter that had to be delivered to the Colonel should have been completely ruined when the Corporal was in the river.

Plot hole: The Bishop in the film is performing the duties you would expect of someone in his position (giving mass, hearing confessions, performing weddings etc.) He has his own private chambers in the cathedral, refers to Robin as 'the boy I knew' and talks about hearing his Father's confession four months earlier; so he's been around for a while. The problem is the credits refer to him as the 'Bishop of Hereford'. No explanation is ever given for why the Bishop of a city 100 miles away is living and working in Nottingham rather than looking after his own diocese; or why the Bishop of Nottingham isn't around to look after his. (The Bishop of Hereford was an enemy of Robin Hood in the original ballads, and it's likely the filmmakers just gave that name to the Bishop in the film due to its familiarity, without thinking about the plot hole this creates).

Plot hole: How could the police miss finding Cybil in the trunk of Michael Zane's car when it was in an impound lot? They would have definitely searched the car if he was found in violation of a federal offence (for carrying the weapons). Even if they didn't do a search, they would certainly have heard the sounds that Cybil would have made from being locked in the trunk.

Plot hole: When the warden comes into the cell the morning after the escape, the poster covering the hole is fastened down on all four corners - impossible to do after squeezing into that small hole. [On the DVD commentary, the director confirms that this was a movie "cheat".] (01:49:05)
Suggested correction: It's a shame the director surrendered, but for someone as smart as Andy, this is the smallest of problems. He could've put weights on the bottom of the poster, or used magnets he embedded in the walls together with iron glued to the poster, or enough washers in the bottom to essentially do both.
If he can make a six foot escape tunnel, he can scrape out several small holes around the poster's edge, and insert the aforementioned magnets, glued in however he can manage (ie tape, chewing gum).
He could have simply used glue mixed with dirt to weigh it down. Once the glue dried it wouldn't matter how heavy the poster was, so long as there was contact.
How could Andy do that after he escaped through the hole in the wall?
I don't think it's what happened, but easily enough. Put magnets in the wall during his tunnel digging process - he had years - then something magnetic affixed to the corners of the poster. As soon as he was in the hole the poster would hang down and affix itself to the bottom corners.
Further, if the poster weren't "glued" on the bottom, it would not have been taught enough for the warden's pebble to go through it. If the poster were attached loosely, the pebble would have simply bounced off.

Plot hole: After the kidnappers kill the trooper and then one chases after the 2 eyewitnesses you can see that they are on a straight road (no turns and he catches up to them fairly quickly) but the next morning when Marge arrives on the scene of the 2 bodies she arrives from the direction of the trooper's body (the first shooting). After examining the bodies of the eyewitnesses she asks her deputy "where the trooper is" and the Deputy points in the direction she just came from and states "down the road a bit" how did she miss it? She would have had to have driven right past the trooper's crime scene to get to the 2 bodies.
Suggested correction: The trooper wasn't visible from the road, he was dragged into the ditch. She also could have been asking if he was in the hospital or morgue.

Plot hole: When Renee Russo was reviewing the tape showing the room with the painting to see who stole the painting, and the tape was blank because the heat generated from the suitcase hidden under the bench, why didn't she just back up the tape completely to see who put the suitcase there in the first place? (00:28:30)

Plot hole: "Dorothy Michaels" does not exist, but suddenly becomes famous. It is simply not feasible that nobody looks into her background! Not one single print or television reporter is interested in her life story? Nobody has ever wondered where she came from, has checked into what other roles she had played, or has expressed interest in her personal life? That's impossible.

Plot hole: One of the bank robbers, a former soldier, Ray Merrimen just got paroled 8 months ago for a previous felony. This film takes place in California. Convicted felons are prohibited by law from touching or owning firearms. Merrimen is at a public shooting-range with CCTV shooting his firearm. The police officer tracking him since he's a suspect in a new string of former and recent holdups walks into the shooting-range and they just stare at each other. He could've been busted and sent back. (01:03:45 - 01:06:00)

Plot hole: Radl and Steiner discuss the entire scheme to kidnap Churchill on the Alderney docks - in full view and hearing of a number of civilians (who shouldn't be there, pace another posting), including local fishermen. Though the Germans banned all fishing activities in the Channel islands including Alderney in 1941, they were well aware that there was a flow of information from the island to military authorities in the mainland. Why would they be so stupid as to discuss a top secret military mission in public? In reality, they wouldn't even discuss it in front of their own men.

Plot hole: A detective would never be assigned to a suicide scene, since suicide is not a crime. A detective would only be assigned if the suicide is actually found as a murder. Nor would a detective be assigned to find out about a potential sexual relationship or affair unless it involves a crime.

Plot hole: Swapping his dental X-ray records with his deceased partner won't convince anyone that Varrick is dead - then (as now) the patient's name appears on the X-ray.

Plot hole: SPOILER: When Amy comes back, doctors would have checked her non-existent head wound from the "abduction", from where she supposedly lost that much blood. That would and should have revealed all of Amy's lies.

Plot hole: When Ben Affleck is meeting with the man who changes Samuel Jackson's credit record, the man remarks that Samuel Jackson should not have told Ben Affleck that he was in insurance. Samuel Jackson never told Ben Affleck that he was in insurance.