The Method in the Madness - S8-E5
Continuity mistake: When Sweets is staying at Booth's and Brennan's house, he comes downstairs after taking a bath and, as he turns, his shoulders are shown without the scars he has in another episode.
Factual error: It's established that a Birimbao is a "small flute" by Dr Brennan. However, a Birimbao is a stringed percussion instrument. (00:03:00)
The Carrot in the Kudzu - S9-E18
Factual error: The plant the victim is covered in is not Kudzu. Kudzu is trifoliate (three leaflets per node) with two or three lobes per leaflet, and with entire margins (no serrations). The plant shown is serrated and does not have lobes.
The Final Chapter: The Day in the Life - S12-E11
Revealing mistake: Aubrey takes a tablet of some kind. However if you watch closely you will see he drops it in his mug instead of in his mouth.
The Monster in the Closet - S11-E13
Continuity mistake: Karen cuts her hand in the interrogation room. Between camera angles the amount of blood changes instantly. (00:24:15)
The Party in the Pants - S8-E22
Other mistake: The body falls from the excavator revealing there is no other debris in the excavator. However when the team get there they are told that the load in the bucket fell on the body, crushing the head. (00:03:15)
The Man in the Fallout Shelter - S1-E9
Continuity mistake: When Lisa arrives at the end she puts her hand to her shoulder. Camera cuts and it's by her side. (00:37:20)
Revealing mistake: When the town doctor confirms the clothing of the female victim you can see the victim is breathing despite missing a heart and being dead for a week. (00:33:10)
The Movie in the Making - S11-E18
Factual error: Angela try to recover some digital data (like SMS or the call list) from memory chip of a 2006 mobile phone. But there's not any memory chip on Angela's work table; there's a SO-DIMM RAM wafer, probably an old DDR which makes no sense: 1. RAM is a volatile memory, so after power off, data goes bye. 2. Lot of chips for a simple mobile phone memory 3. It's a RAM wafer. (00:28:50)
The Science in the Physicist - S4-E19
Continuity mistake: Bones finds a spot of damage on the chair (front side, about 4" down from the top edge). Yet later, the chair is without any damage.

The Knight on the Grid - S3-E8
Continuity mistake: When Booth & Bones' taxi gets blown up & flips, the car lands upright, with nothing on the roof except the (now broken) taxi light. Yet when Booth squirms out the driver's side window, there are a few large chunks of asphalt sitting on the roof. (00:25:20)
The Foot in the Foreclosure - S5-E8
Audio problem: In the beginning of the episode, Booth introduces his grandfather to Sweets and his grandfather asks, "Where did you get your M.D., in a Cracker Jack box?" You can hear Bones laugh, but her mouth remains closed.

The Blonde in the Game - S2-E4
Continuity mistake: When Booth and Bones are discussing Helen Majors, Booth gets a phone call and he holds the phone to his left ear with his right hand. In the following shot, he is holding the phone in his left hand. (00:21:05)

The Plain in the Prodigy - S5-E3
Factual error: When Bones and Booth go to visit Levi's parents and Sarah's brother yells at her that she is needed at home, when he gets into the buggy you see him wearing a wedding ring. Amish wear a beard to indicate marital status, not jewelry it is against the religion to wear any decoration including wedding rings. (00:08:50)
The Man with the Bone - S1-E18
Character mistake: The finger bone found in the dead man's hand was said to come from somewhere near Assateague Island, to which Hodgins replies, "That's where the money pit is." The "Money Pit" is actually located on Oak Island in Nova Scotia, not on Assateague Island, in Maryland/Virginia. He also says that they dug it out to about 150 feet, which is also incorrect. The 1971 Triton excavation was able to dig a shaft to a depth of 235 feet. What is said to be on Assateague island is the legendary lost Spanish galleon La Galga, not the Money Pit. (00:02:55)
The End in the Beginning - S4-E26
Factual error: Near the end, as Bones is typing her book, she hits the
Continuity mistake: The person responsible for background shots while anyone is in a car driving, is grossly negligent in their continuity. Very rarely do Bones & Booth drive down a street without the background changing rapidly from urban to rural streets, and back. In a Season 1 episode, they're driving through a flat desert, with nothing in the background except scrub - and then suddenly, a mountain appears in the middle of the shot.
A Night at the Bones Museum - S5-E5
Factual error: Hodgins makes a remark about the mummy wrappings being for an important person because it is a diamond weave pattern. However, the diamond weave pattern didn't come into effect until the Greco-Roman period that began at 332 B.C. It certainly wouldn't be found in an 18th dynasty mummy, no matter how important he was.
A Night at the Bones Museum - S5-E5
Factual error: Hodgins says that natron was a naturally drying agent, which was used in the second century B.C. This is both wrong and right. While it is true that natron was used for mummification, it was used for thousands of years in Egyptian culture, not just the second century B.C.
Chosen answer: Pickering states the name "Juan Guzman" and during the run of the show we are never told who he is, or why Brennan had been in Cuba and met with this Juan Guzman. We don't know if there is any kind of "relationship" between Brennan and Guzman. A bit frustrating, but I like how this short scene shuts down Agent Pickering's entire review, and it hints at Brennan's career history and her level of security clearance.
Super Grover ★
Thanks for the clarification. It's been a while since I watched the series start to finish. It also adds to show how much power Brennan actually has.
Ssiscool ★
Do you remember when Bones was telling Angela about the time she was on one of her out of the country trips, and she was thrown in a dark cell for what she later found out was 3 days? She was crying and looked terrified as she remembered this. She had that same look as someone who was remembering past trauma when Pickering said this name. I kind of always thought that "Juan Guzman" was the one who did that.