Deliberate mistake: The final Auton attack in this episode is supposed to take place in a busy London street, but it is a pedestrianised area, and several shots reveal this. For example, there are no road markings visible, no apparent distinction between pavement and road, and a bus stop appears to sit in the middle of the 'road'.
Deliberate mistake: When Jack is scanning the gas mask people, he has a scanner on his right wrist. However, when he shows Rose and the Doctor his image of the Chula warship, the scanner is on his left wrist. The makers flipped the stretch of film, according to the commentary, to make the shot work. (00:37:45)
Chosen answer: 1) When Stephen Moffat took over he ignored a lot of what had been developed before (there is not in-universe answer). 2) It would have killed Rose, so the Doctor absorbed the energy. His body regenerated before the energy could do a significant amount of damage that would prevent regeneration.