Revealing mistake: McCoy is knelt down with the rather comically named Flavious Maximus attacking him. On the remastered version it is obvious it is a stunt double doing the part. (00:34:20)
Revealing mistake: Kirk jumps across the burning hot forge to hide from the people approaching him, only problem is that he actually touches the red hot coals with the palm of his hand. Somehow he managed to avoid serious burns. (00:31:15)
Continuity mistake: Mr. Sulu's equipment comes up to aid him at red alert, yet shortly after it is gone. (00:39:00 - 00:40:00)
Continuity mistake: Throughout the entire episode the planet's sky is red, yet during the scenes where the clouds come and lightning strikes, it becomes obvious that they simply used stock footage of Earth's clouds, since the sky is blue. (00:11:50)
Visible crew/equipment: When Vaal is not fed and he starts spewing smoke everywhere, you can see a volcano type firework going off just inside his mouth. (00:43:55)
Other mistake: Kirk and Spock stun two Klingon guards, yet despite being unconscious, the guard on the left jumps from the balcony and lands feet first on the ground. If he were really unconscious he would have simply tumbled down. (00:36:20)
This Side of Paradise - S1-E25
Continuity mistake: Kirk threw a "spore flower" across the bridge and it landed towards the front of the bridge. Later on, Kirk returns to the bridge and despite all the crew being on the planet the flower is gone. (00:28:20)
A Taste of Armageddon - S1-E24
Continuity mistake: The landing party had been apprehended and placed in a locked room under the supervision of a single guard. Spock manages to free them and Kirk knocks out this guard, leaving him in the locked room. Later on in the episode, they return to this very room and somehow this guard is gone. He could not have woken up and walked out because it is a locked room and Kirk took his key. (00:23:45)
Continuity mistake: In the original version, the planet is the same as the one used in "Bread and Circuses", but when the Enterprise leaves orbit at the end, it is a totally different planet, as it is the one used in "Friday's Child".
Continuity mistake: When the Enterprise is trying to push away the asteroid using the deflector, a quick shot of Uhura is shown from stock footage of "And the Children Shall Lead," but she is not in the rest of the episode.
Tomorrow is Yesterday - S1-E20
Other mistake: The Air Force police officer (played by Hal Lynch) was beamed up from inside the records room (after finding Kirk exiting the dark-room) but was returned outside the room... so he was physically transported INTO himself (as opposed to replacing the beamed-up future version at the exact moment and place he was removed as they did the pilot, Christopher).
The City on the Edge of Forever - S1-E29
Factual error: When Edith Keeler is killed by the truck, it is traveling at about 25 miles per hour. At that speed and her weight around 120 pounds, she would have been thrown about 50 feet. However, she's seen dead on the ground in front of the mission where she was hit.
The Conscience of the King - S1-E14
Plot hole: After Kirk sees Leighton laying next to the rocks, he rushes over to examine him. He places one hand on Leighton's arm and the other on Leighton's waist and declares "It's Tom Leighton...he's dead." All this without the use of a medical tricorder or even the experienced opinion of the ship's doctor to confirm what Kirk is seeing. (00:10:46)
Other mistake: The only way to beam up to the ship is to repeat the chess counter move after ASKING to be beamed aboard. After the two Captain Kirks fight ends with Spock stunning Garth with the phaser, Spock contacts the Enterprise. After saying "Spock to Enterprise, and hearing Scotty say back to him "Scott here", Scotty says" Queen to Queen's level 3" without Spock requesting to be beamed aboard or even waiting to see what Spock wanted in the first place. (00:46:56)
Other mistake: Stiles gives a countdown for impact to Kirk saying "estimate it will overtake us in two minutes, sir." After only 31 seconds, Sulu starts his own countdown, saying "5, 4, 3, 2, 1, impact." Only 55 seconds have passed from the time Stiles started his countdown to actual impact. Everything was shot in real time without scene changes. Being off the impact estimate time by over a minute doesn't sit well considering a Starship's advanced sensors. (00:29:27)
Continuity mistake: Kirk turns his head and displays a stunned look... a full second before the Gorn even starts to disappear. (00:45:47)
Revealing mistake: As Scotty is cutting through the wall, the line where the burn is supposed to go is outlined on the inside of the wall.
Continuity mistake: At the end, on the Bridge, when the warning marker explodes, Kirk's arm shifts position between shots.
Continuity mistake: When Scotty inhales the gas, the amount of smoke changes between shots.
Answer: After causing Norman to overload, all of the other androids shut down. The same could be said for the androids on the Enterprise.