Continuity mistake: When Robin is talking to her boss about his dog, the pens and pencils in the holder on his desk change depending on the camera angle.
Continuity mistake: When Barney is crouched down, leaning against Robin's chair, the money in his right hand vanishes between shots.
Continuity mistake: In the opening scene at the bar, when Ted is debating whether or not to ask out Robin, Marshall's beer is in his hand when the camera is on him, but on the table when the shot is from behind him. (00:03:00)
The Chain Of Screaming - S3-E15
Continuity mistake: The ice cream Robin's eating in Ted's car keeps changing shapes between shots.
Continuity mistake: After Natalie throws spaghetti at Ted, the amount and position of the spaghetti pieces changes instantly between shots.
Intervention - S4-E4
Continuity mistake: In this episode we see that Barney punched a hole in the wall next to the door because Ted broke apart a girl fight. It is supposed to be under the calendar on the right side of the door. It is also said that Ted and Robin were dating at this time. But earlier, in the episode "Wait For It..." (3-1) We see Ted going through his break up phase after Robin. One of the phases is painting the apartment, and there is no hole.
Continuity mistake: When Ted, Barney and their dates are in the tub, Barney is holding a bottle. He takes a sip (i.e. no cap) and hands it to Amy (Ted's date). Now it has a cap. She hands it to Ted who unscrews it and has a drink.
First Time In New York - S2-E12
Continuity mistake: When Robin is talking to her sister Katie in the Empire State Building lobby, Katie's bag moves between shots. Sometimes she wears it with the strap hanging straight down from her shoulder, in other shots the strap goes across her chest like a messenger bag.
How Lily Stole Christmas - S2-E11
Continuity mistake: When Ted, Robin and Barney are at the bar, discussing the fact that Barney is ill, the level of the drink in Robin's glass goes up and down between shots.
Continuity mistake: When the gang are discussing what Ted should say to break up with Natalie, the amount of beer in Marshall's glass goes up and down between shots.
Continuity mistake: The scenes before Robin and Barney leave the diner vary depending on the angle. From outside we see that Robin fixes Barney's suit before they leave, but from the inside she doesn't.
Continuity mistake: When Barney and Abby are lying in bed after the Local Art Cafe scene, Abby's arms/hands change positions between shots.
Continuity mistake: When Robin and Lily are talking in the apartment of Barney's date, Lily's hand moves instantly between shots from resting on her shoulder, to resting on the handbag by her side.
Other mistake: At the beginning of the series, Ted starts telling the story of how he met the mother of their children. When he starts describing how he met Robin, he doesn't reveal that it was not their mother until the end of the pilot. But children should have realised it wasn't their mother when Robin said she was a journalist and worked as a TV presenter. The kids knew their mom wasn't a journalist, so they shouldn't have been surprised at the end of the episode when Ted said "this is how I met your aunt Robin".
The Wedding - S1-E12
Plot hole: After Claudia's call, they decided that Lilly will meet her at the bar and the guys will meet Stuart. They're all at the apartment at the same time and the dudes have gotten to Stuart's apartment, convinced him to still marry Claudia and then go back to the bar right after Lilly gets there. And also giving a lot of time to Barney hitting on Claudia. There's no way that could happen in this order, they live right above the bar, Lilly was supposed to be there before Claudia.
Good Crazy - S7-E22
Continuity mistake: When Ted is on a date with the 2nd girl you can see her tattoos but when Ted sees Robin the tattoos change. (00:09:50)
Nothing Good Happens After 2 A.M. - S1-E18
Continuity mistake: When Ted arrives at Robin's apartment, he gets out of the taxi. Camera cuts to outside, and he opens the door and gets out again. (00:09:50)
Continuity mistake: When Ted is talking about getting a blessing from a pimp, Barney's drink just disappears from the table. (00:03:35)
Nothing Good Happens After 2 A.M. - S1-E18
Continuity mistake: When Robyn is leaving at the start, the dogs change place instantly. Note the Dalmatian. (00:01:30)