Rendezvous - S2-E10
Visible crew/equipment: At the start, Kellerman is on the phone to Kim. When he is, the stage lights and equipment is reflected in his glasses. (00:03:40)
Visible crew/equipment: When Michael gets out of the red truck in the desert, the silver wing mirror reflects a black object that is at the exact angle of the camera shot. (00:14:05)
Visible crew/equipment: Just as Alex works out of the numbers, the shot changes to Michael. In the closeup of his face, a white reflector screen is visible in his sunglasses. (00:20:30)
Visible crew/equipment: When Kellerman rings Mahone, the camera rig is reflected in Mahone's glasses. (00:25:24)
The Message - S2-E15
Visible crew/equipment: When Paul, Link and Michael kidnap the camera man, a white T mark is visible on the floor. (00:03:36)
Visible crew/equipment: Alex finishes talking to his wife, looks outside, and in the fan you can see the face of one of the crew members.
Good Fences - S3-E4
Visible crew/equipment: When Whistler is walking to talk to Sofia for the first time, the camera shadow can be seen to move down the metal fence. (00:11:10)
Good Fences - S3-E4
Visible crew/equipment: When Link gets into an argument with Sofia, as she says about him not being the only one who has people they care about in there a shadow can be seen to move over her back. However she is stationary, Lincoln is in front of her and Sure is sat on the sofa on the other side of the room as shown by the next shot. (00:31:00)
Answer: Don Self actually worked with Whistler before he died. And Whistler with the bird book actually knew where Scylla was.