Visible crew/equipment: In the scene when Mahone is trying to escape from the restricted area, Sarah looks into the window of the door to see him. The camera moves in as well and you can see it reflected in the glass.
Audio problem: When Gretchen kills the guy in the prison he lets out a very obvious fake scream similar to a Wilhelm scream. Also, he is being choked around the neck, how is he able to make the scream? Take note of when you see this scene in the next episode's review. The guy doesn't make the scream in that version.
Continuity mistake: The shadows and lighting change throughout the scene with T-bag giving the money to the prisoners. At one point he is in shadow, the next full sun.
Visible crew/equipment: Gretchen arrives at the pickup spot with the van with LJ inside of it. As she opens the back door the camera moves closer and the reflection of the crew in the glass is obvious. (00:08:30)
Good Fences - S3-E4
Visible crew/equipment: When Whistler talks to Sophia about Lincoln, the camera starts from a high angle. It moves down and to the right. During this time it casts a very obvious shadow on the fence.
Good Fences - S3-E4
Continuity mistake: The same aerial shot of the prison tower from the previous episode is shown again near the beginning of this episode. Take note of the vehicle driving to the right. Some time has passed between the previous episode and this one.
Call Waiting - S3-E3
Other mistake: Sucre is supposedly passed out, however when Lincoln puts him on the couch his arm moves upward.
Orientación - S3-E1
Continuity mistake: The way Gretchen holds her martini glass when first talking to Lincoln shifts during camera angle changes. (00:36:45)
Visible crew/equipment: When Sucre gets pulled over, the camera tracks along the driver side of the car. The camera operator is briefly visible. (00:25:25)
Revealing mistake: Michael and Lincoln climb over the dirt pile and down to the other side. The dirt area below them has been disturbed from previous takes.
And Then There Were 7 - S1-E11
Continuity mistake: Quinn falls into a well and you can see his cell phone sitting right next to him. A few minutes later he grabs it from his pocket as if it's been in there the whole time. (00:30:00 - 00:34:30)
First Down - S2-E4
Continuity mistake: Link pulls the clip out of his pocket, and the way he holds it changes between shots. (00:39:00)
English, Fitz or Percy - S1-E5
Continuity mistake: When Nick and Veronica are trying to get the original tape, the folder and clipboard on the desk keep moving and changing positions between shots. Note the gap between them. (00:29:50)
Subdivision - S2-E6
Continuity mistake: When the blind woman rings the police, she has both hands on the phone. Camera cuts and now she has one hand on the phone and the other in her lap. (00:31:40)
Subdivision - S2-E6
Continuity mistake: When T-Bag has a drink of alcohol he has the drink to his mouth in one shot and in the over the shoulder shot it is lowered. (00:27:10)
Riots, Drills and the Devil: Part 2 - S1-E7
Other mistake: Unlike everyone else in the prison during the riot, Sara Tancredi is not drenched in sweat. In fact, she's not sweating at all.
Good Fences - S3-E4
Continuity mistake: When Alex snaps at Bellick while looking for a felt tip pen, they move apart between instant shots. (00:10:40)
Continuity mistake: They are hanging on the helicopter's rope, then they're still fighting on the roof and the helicopter's rope is being lowered. (00:37:50)
Other mistake: When the driver hits Sucre's car you can see a doll in the driver seat. And after the fight Gretchen gets in the car by herself and starts the car on the wrong side (the passenger seat), plus when she leaves the dead body disappears. (00:34:22)
