The Brother in the Basement - S11-E2
Other mistake: Dr Brennan barges into the interrogation at the end of the episode. Aubrey exclaims out "Dr. Brennan" however, he exclaims before he has seen who it is. (00:33:10)
The Resurrection in the Remains - S11-E5
Continuity mistake: When the pumpkin falls into the coffin, the face is facing down the body. Camera shows an overhead shot and the pumpkin face is now facing up. (00:05:05)
High Treason in the Holiday Season - S11-E8
Visible crew/equipment: While they're doing a full workup of the room at the Riverbanks Inn, just as Hodgins mentions that Ryan Gill has been in the room like an elephant in a china shop, when Agent Aubrey walks in the T-mark can be seen on the carpet. (In the Netflix version the T-mark has been edited out).
The Cowboy in the Contest - S11-E9
Other mistake: During one of the shoot outs, Bones misses a target but is scored a perfect 12.
The Doom in the Boom - S11-E10
Audio problem: When the BAU agent first appears and is explaining her findings, the audio doesn't always match up. (00:05:00)
The Doom in the Boom - S11-E10
Other mistake: Aubrey suffers severe shrapnel wounds to his back as explained in the episode. However in the hospital he is lying on his back and sat up in bed. (00:17:35)
The Doom in the Boom - S11-E10
Plot hole: Dr. Vizeri leaves the Jeffersonian months prior to this episode (confirmed in the episode) however, after turning up unannounced he still has his work jacket. It is unlikely his jacket would still be there. (00:20:05)
Suggested correction: It is not unreasonable to assume it was simply put into storage rather than being thrown away. It was perfectly usable and could have been used by another member of staff if theirs was unavailable.
I've forgotten the exact circumstances of Dr. Vizeri's departure, but the Jeffersonian probably would not have a policy that required personalized work clothing to be returned. Dr. Vizeri indicates in the episode that it had been his strong desire to return ever since his departure, so it is likely that he would have retained the garment for practical, or at least sentimental reasons.
The Doom in the Boom - S11-E10
Character mistake: In the last scene of the episode, the hospital doctor comes into a waiting room to give a status on Hodges to his coworkers. She is carrying two large x-ray films. Bones says "Are those the MRIs? Let me see them." Bones would have known that they were x-ray films and not MRI scans, which would have been printed on paper.
The Murder of the Meninist - S11-E12
Other mistake: Cam is burning a pork human analogue which is alight with flames. When the analogue explodes and covers Hodgins in meat, he is not burnt by the searing meat. (00:27:25)
The Monster in the Closet - S11-E13
Continuity mistake: Cam finds the watch covered in cat food. Between camera angles the amount of cat food on the watch is constantly changing. (00:19:40)
The Monster in the Closet - S11-E13
Continuity mistake: Karen cuts her hand in the interrogation room. Between camera angles the amount of blood changes instantly. (00:24:15)
The Fight in the Fixer - S11-E15
Continuity mistake: When Bones is discussing Angela's cut off point for reconstructions, her hand goes from open and facing to the floor to pointing with one finger at the screen.
The Fight in the Fixer - S11-E15
Revealing mistake: Hodgins turns the furnace off at the start. However the yellow light from the flames in the tunnels disappears before he turns the furnace off.
The Secret in the Service - S11-E17
Visible crew/equipment: A potential editing oversight can be found as Booth and Brennan are entering the shooting range by watching the space under the rifle of the third shooter. The gas can be seen coming from the spray can to the shooter's right, not the barrel of the rifle. (00:19:05)
The Secret in the Service - S11-E17
Plot hole: The chute is supposed to be so narrow that it injured the Secret Service agent's shoulder, but is wide enough for Hodgins to fit down comfortably in a sitting position.
The Movie in the Making - S11-E18
Factual error: Angela try to recover some digital data (like SMS or the call list) from memory chip of a 2006 mobile phone. But there's not any memory chip on Angela's work table; there's a SO-DIMM RAM wafer, probably an old DDR which makes no sense: 1. RAM is a volatile memory, so after power off, data goes bye. 2. Lot of chips for a simple mobile phone memory 3. It's a RAM wafer. (00:28:50)
The Movie in the Making - S11-E18
Continuity mistake: The amount of squirt cheese on Aubrey's pop tart changes between shots. (00:32:40)
The Movie in the Making - S11-E18
Character mistake: Near the start Bones calls Dr. Vasiri, Dr. Resedi. This is a mistake as she has worked with Dr. Vasiri for a number of years and never calls him Dr. Resedi.
The Head in the Abutment - S11-E19
Character mistake: Hodgins flies a decapitated human head via drone all the way from the crime scene to the Jeffersonian. A distance of several miles over city and urban landscapes. This would comprise all the evidence and be a massive risk to public health. Dr. Hodgins would know how much it would mess up the evidence since his area of expertise is particulates, and insects, both of which would be compromised. (00:28:30)
The Head in the Abutment - S11-E19
Continuity mistake: After Hodgins asks for a drone we see Booth and Bones driving over a bridge. Camera cuts to inside the car and they are now in the middle of a town.
