Mr. Monk and the Daredevil - S6-E7
Revealing mistake: When Monk, Natalie, and Joey are fighting on the roof, the end of the metal pipe in Joey's hand wobbles around a lot, as if the pipe is made of rubber. (00:37:20)
Mr. Monk and the Daredevil - S6-E7
Revealing mistake: Watch as Natalie fights with Harold's cousin on the roof. The same shot where she's barefoot, she's also got thicker hair, indicating a wig on a stunt double.
Mr. Monk and the Wrong Man - S6-E8
Revealing mistake: During the fight between Max and Paulie, the stunt double for Paulie is easy to spot - he has a full head of dark hair, whereas Paulie is gray and largely bald on top. (00:23:30)
Mr. Monk Joins a Cult - S6-E11
Revealing mistake: When Monk and Natalie are talking to the cult members, a Culver City bus can be seen driving in the background, which is a Los Angeles bus, but the show takes place in San Francisco. Culver City is home to a lot of movie shooting. (00:09:15)
Mr. Monk Is on the Run (2) - S6-E16
Revealing mistake: When Natalie visits Dale in prison you can tell that Dale is wearing a "fat suit". The suit on his arm is folding up on itself like a glove.
Answer: Stottlemeyer was already upset after the phone call. He was trying to get "Kevin" (who would have to be a judge, but no further character information is given) to issue a restraining order with no evidence of needing one, except that Adrian Monk said she needs one. Kevin said he would need to "sleep on it." So it's clear they've been trying to provide protection and unable to get the results they need, which seems to be based on no one trusting Monk the way Stottlemeyer does. He's just angry that they failed to protect Linda despite all their work. Although it does feel like a scene was cut, or altered, from the show that shows the futile attempts to protect Linda which built up to his outrage.
Bishop73