Mr. Monk Takes Manhattan - S3-E1
Visible crew/equipment: After Stottlemeyer swipes the keys to Captain Cage's office, when he and Disher enter Cage's office the reflections of the moving boom pole and camera operator beside the camera are visible on the glass window. (00:20:45)
Mr. Monk and the Blackout - S3-E3
Visible crew/equipment: During the police investigation at the power station, the shiny blue construction helmets show us the stage lights, reflectors, camera and film crew several times. (00:09:00)
Mr. Monk and the Girl Who Cried Wolf - S3-E6
Visible crew/equipment: Nurse Davis swings open Disher's car door at the end, and captures a reflection of the camera and the entire film crew standing nearby. (00:40:40)
Mr. Monk Takes His Medicine - S3-E9
Visible crew/equipment: When Monk is talking to the two patrol officers about the suicide and walks down the street, the backlot trailers and equipment are visible around the corner of the building and you can also see a set golf cart. This is supposed to be the street that the shooter and biker drove down earlier in the episode. (00:07:13)
Mr. Monk Takes His Medicine - S3-E9
Visible crew/equipment: When the armored car is being robbed, the camera pans to the left just before Highsmith is about to kill the driver. During this pan, the reflection of the cameraman is visible on the side of the armored car.
Mr. Monk and the Red Herring - S3-E10
Visible crew/equipment: At the science fair during the fire, a kid offers use of his fire extinguisher. When the captain goes to take it from him you can see a member of the crew handing it to him.
Answer: Stottlemeyer was already upset after the phone call. He was trying to get "Kevin" (who would have to be a judge, but no further character information is given) to issue a restraining order with no evidence of needing one, except that Adrian Monk said she needs one. Kevin said he would need to "sleep on it." So it's clear they've been trying to provide protection and unable to get the results they need, which seems to be based on no one trusting Monk the way Stottlemeyer does. He's just angry that they failed to protect Linda despite all their work. Although it does feel like a scene was cut, or altered, from the show that shows the futile attempts to protect Linda which built up to his outrage.
Bishop73