Continuity mistake: The ropes tying Yeoman Rand to the chair keep changing positions (above her elbows or below her elbows) between shots. (00:39:40)
Continuity mistake: When Nomad initially attacks the Enterprise, Uhura appears/disappears in subsequent shots of the bridge.
What Are Little Girls Made Of? - S1-E8
Continuity mistake: While Kirk's trying to convince Ruk that Korby's creating the same danger just like the Old Ones, when Kirk tells him that humans are full of unpredictable emotions, the closeup of Kirk is a flipped shot (the jumpsuit's blue and green switch sides).
Mudd's Women - S1-E7
Continuity mistake: During Mudd's hearing Eve's sitting in the chair beside Mudd, but when Kirk states that the hearing is closed and that Mud will be handed over to legal authorities, in the wideshot Eve's chair is empty, but in the next closeup Eve is still sitting in the chair. (00:18:15)
The City on the Edge of Forever - S1-E29
Continuity mistake: When McCoy arrives in NYC while the man is stealing a bottle of milk, in the closeup the actor's ring finger is partially amputated, but when he steals McCoy's phaser his finger is intact in the closeup.
The Conscience of the King - S1-E14
Continuity mistake: After Kirk introduces himself to Lenore at Leighton's cocktail party, when she tells him, "Karidian is a most unusual man... That was my father," Lenore holds the goblet in her left hand as she takes a sip, but next shot the goblet is suddenly in her right hand as she sips.
A Taste of Armageddon - S1-E24
Continuity mistake: Just after the ship is first attacked, Scotty tells McCoy, "We can't fire full phasers with our screens up." Say what? The Enterprise couldn't operate transporters with the shields up, but it fired its phasers, full or otherwise, with the screens up every time it went into battle, and always had. If they'd been forced to shut their shields down every time they fired, the Enterprise would have been history long before this. (00:23:30)
Space Seed - S1-E23
Continuity mistake: At the hearing in the final scene, there are two bits of debris of some sort (small, black and roundish) littering the floor at the bottom left of the screen. Whatever it was disappears when Scott, Spock, Kirk and McCoy get up to leave the room. (00:48:20)
The Empath - S3-E12
Continuity mistake: During Kirk's torture scenes, the back shots have Kirk's arms stretched wide apart and yanked straight - the front shots have the chains going overhead and his arms are bent at the elbows.
Is There in Truth No Beauty? - S3-E5
Continuity mistake: At the dinner for Miranda, Kirk drains his glass. No one refills it, but it's nearly full again a few shots later. (00:08:25 - 00:10:35)
Suggested correction: Kirk's glass is not empty at 8:25, it is the top of the decanter in front of his chest that looks like an empty glass in the shot. Later Kirk empties his glass during toasts and refills his own glass as he watches Marvik leave the room.
Continuity mistake: When Chekov sits outside the general store chatting with Sylvia, his left arm and her right alternate from entwined to un-entwined and back again as the shots change. (00:27:40)
Who Mourns for Adonais? - S2-E2
Continuity mistake: Kyle reports the landing party's whereabouts on the surface, and Spock asks, "And Apollo?" Kirk had no chance to call the ship after Apollo revealed his name - so Spock should not have known it. (00:22:10)
Continuity mistake: After Garth attempts to convince Mr Scott that he is Captain Kirk and to beam him up, while he is banging his fists on the floor in anger he transforms back into himself and the fly like ring on his finger breaks and slides out of shot. It's quite hard to see but it does. The next time we see Garth's hand his ring is intact yet he has not transformed himself again to repair it.
Continuity mistake: When the prosecutor visits the cell, Kirk's hands on the bars change positions when the camera angle reverses. From the inside, there's one bar between Kirk's hands. From outside, there are two. (00:28:10)
Continuity mistake: When the giant cat breaks down the cell door, Korob falls beneath it face down with his head toward the door. In the very next shot, he's in a completely different position - face up with his feet toward the door. (00:43:30)
Continuity mistake: During Spock's Court Martial, Chekov says that General Order 4 is the only exception to Starfleet's no-death-penalty policy, and Sulu and the others agree. However, according to "The Menagerie," that exception is General Order 7, not 4.
Continuity mistake: Korob uses his wand to put a feast on the table and light the candles. Only, in the very next, close-up shot of him, the feast is gone and the candles are unlit again. Next wide shot, everything is back. (00:20:00)
For the World is Hollow and I Have Touched the Sky - S3-E8
Continuity mistake: After he falls unconscious onto the blue rug, McCoy's position relative to the rug's top edge keeps changing between shots. (00:36:40)
Continuity mistake: When Kirk and Spock are chatting in Kirk's quarters, they finish their discussion and as they head out Kirk orders the ship to red alert. Then after the commercial break, they're on the bridge, the Gorn ship is at a dead halt, and Kirk orders the ship to red alert again. With a hostile ship in the vicinity, Kirk, a highly experienced captain, would hardly have taken the ship off red alert.