Continuity mistake: Near the end, when Pulaski finally stops the infection in Riker and is just about to contact Picard with her success, look at Riker lying on the table. His eyes are open, then he closes them slowly. The next scene has Riker opening his eyes for the first time after recovering from the procedure.
Other mistake: In this episode, in Riker's memory, the encounter between him and Quinn is re-lived. As Quinn starts to attack Riker, you can see Riker's stunt double's face, and tell that it's Quinn's stunt double, as the hair is smooth, not styled. Also, Riker is a few inches taller than Quinn, but in the onset of the attack, they're equal heights.
Continuity mistake: After Pulaski examines Riker's leg, and readies to beam up, he leans to the right to get up. In the wide shot, he does it again.
Chosen answer: The uniform does indeed change colour. It may be due to the need for a green screen in part, or perhaps some lighting altering our perception. That being said, it certainly looks green at the start, blue thereafter.
The show has been done in HD now and not sure if they fix this problem.
Dan23