Der Kampf gegen den Drachen - S1-E3
Plot hole: Shiryu states that the Dragon Cloth, which has been 'for eons' under the waterfall (let's just say it's an exaggeration) is harder than diamond and invulnerable to any attack. In the original manga and anime series, Pegasus uses a sudden dodge during a daring grapple to get Shiryu to strike his own shield with the glove of the armor, shattering both ("invincible sword meets invincible shield") and causing him to fight barechested. In this remake, this whole part does not happen, so when Seiya wins the fight with a heart punch like in the other versions, he does it when Shiryu has his heart still covered by the thick breastplate of the armor, making the whole "Shiryu's armor is impervious to any hit and much stronger than any other Cloth" plot point completely moot.
Suggested correction: It is only said that the "Dragon Shield" is unbreakable.
No, says much more than that. "That might be true for other armors, but the Dragon Armor is special. Nothing can get past my shield. It's unbeatable. The day my Cosmo forced the waters of the Lushan to flow upwards, it revealed the Dragon Armor. Battered for eons by the falling water, the Armor had grown harder and more radiant than a diamond. My Armor is the hardest substance known to man. No matter how fast or hard you strike, you've lost, Seiya." He parried the blow with the shield and so that deserves a special mention, but they keep mentioning the armor as having intrinsic properties, and he is wearing the armor when he is struck by Seiya, which guards his heart. In the original anime and the manga he was armorless after Seiya wrecked it, in here it's intact. It makes no sense, which is why I categorize it as a plot hole and not just as Character error: it's not that maybe he's wrong about the armor, it's the whole situation that now is flawed reprising the original with key differences.
Recognition - S1-E17
Plot hole: Bridge could have used his powers to figure out if Wootox and Sky's bodies were still switched.
Plot hole: During Ryder's report, as Bruce and company watch it on TV, the camera suddenly zooms in on Joker standing on a catwalk above Ryder, and none of the crew, especially not the camera man who caught the villain, makes a comment about this. They may have thought the Joker (or rather an impersonator) was perhaps a surprise gag in the show, but since this is supposed to be a serious documentary report, it is still strange that they wouldn't point it out.
Plot hole: Sydney is able to surmise from the artwork (we could also say from the writing, but her rival is one step ahead of her for 2/3 of the episode and it is established that he does not know the language) the precise location of the koi in Lumbini. The map is 150 years old, but there's no way even with a big stretch of imagination to buy that they both'd be able to pinpoint with such ease and certainty its location in the basement of a random building in the bustling market center of a town, that surely changed plenty during the past century and that does not bear any special landmark.
Invasion of the Punk Frogs - S2-E8
Plot hole: Shredder meets the frogs for the first time and gives them clothes using the holographic projector. The frogs continue to wear the same clothes for the rest of the episode, even without Shredder being around.
Happy Birthday... Everybody - S3-E20
Plot hole: After a chance meeting in Mexico, Tom Matthews invites Kelly and Scott to his home for dinner. The address is unlisted, neither knows where the other lives or is staying, and no address or phone information is exchanged before they part. But Kelly and Scott somehow find the house anyway. (00:09:50)
Mondays Are for Murder - S2-E13
Plot hole: In an effort to keep Glenn's death as quiet as possible, Higgins hires a private pathologist to do an autopsy to see if there were any foreign substances or poisons in his system when he died. A few scenes later it is revealed that Glen was undergoing chemotherapy. How is it possible that the pathologist missed the cancer and the chemo treatment in his investigation? What he found was an excess of antacids.
The White Mountains: November, 2089 AD - S1-E13
Plot hole: The main characters are being pursued by Tripods, mind controlling alien machines. My question is, if the Tripods can turn humans into 1600's puppets, complete with foxhunts, why don't they make some of said mind-controlled humans help with the pursuit?
Farewell My Beloved Witch - S1-E3
Plot hole: Lupin was captured by chance, and he did not plan for that, nor he seemed to have previous knowledge of Stern's appearance, but he escapes regardless using a Mission Impossible-like perfect mask of him. He also somehow kept his own blazer, tie and shoes underneath the uniform and boots he stole and wore. (00:16:00)
Plot hole: The mysterious neurosurgeon Dr. Quinn was mentioned by the fake Myles Taggart under the pretence that his presence was announced by the local newspaper. It turns out that his invitation by the university was a lie - presumably no newspaper story existed at all then, or the university would have acted on that. Taggart is exposed as a fraud, Quinn's link to him is so direct that he was even the one who invited him (instead of goading the Colonel into inviting him like it was his own idea) and yet the Colonel continues to trust Quinn blindly - he even has the whole night and day to think about this simple fact, nothing was decided on the spur of the moment.
Plot hole: This was the first episode of the series and we see that the rangers are unable to figure out how to properly operate their zords; but in Origins Part 1 (which takes place prior to this) they have no issues with the zords at all.
Plot hole: After Kara and Alex are run off the road, Kara is convinced by "Noel Neill", revealed later to be J'onn, to stop using her powers. From context, J'onn had to have been summoned by Eliza, but in 2007, she would still think he's just Hank Henshaw; she doesn't learn he's not, or even that he's a shapeshifter, until 2016, as seen in season 1's "Myriad", well after Kara and Alex have grown up.
Plot hole: As the first prisoner is being pulled towards the organ cutter, you see on the wall the exact shape of the body organs for the brain, lungs, heart, liver, stomach, kidneys and testicles/ovaries that serve as guides and a track for tiny saw blades to come out and cut into the person's body to harvest these organs. The problem is these are in a fixed position, which might work for some people. However people are different sizes, shapes, and heights and most wouldn't match up to these blade guides. So a good majority of the people they cut apart to harvest organs out of wouldn't even give them good ones as the blades would cut into the organs and ruin them. (00:25:20)
Into the Mouth of Evil - S2-E23
Plot hole: While fleeing the guru's disciples through a narrow side street, Jackie gets cut off by the van driven by Dr. Jamba and associates, stun-sprayed in the face, and then loaded into the van. But with three brutish-looking guys being so close to their quarry, the real crooks can take the time for dragging Jackie around to the back door instead of loading him through the side doors?
Plot hole: Loki states while on trial that The Avengers should be on trial for traveling through time to change the timeline. How did he know they came back through time?
Suggested correction: He recognized that there were two Tony Starks in the lobby by the smell of their colognes, and combined with all the other unusual shenanigans going on, he correctly deduced the Avengers travelled through time, though he incorrectly thought it was to prevent his ascendancy.
How exactly do you distinguish the smell of cologne as belonging to two separate people? But besides that, it's pretty wild to jump to a conclusion about time travel when it could be that someone else happens to be wearing Axe.
I'm sure he simply recognized his voice.
Plot hole: Dr. Quest is speaking through the Dragonfly's speakers to the Po-Hos as they fly over the jungle, telling them he is their air God and is angry the tribe has taken hostages. Quest could have told the Po-Hos to just release the hostages, rather than putting himself in danger later on by getting captured.
Plot hole: The Jupiter 2 crew is duplicated; however, the aliens had never seen Penny (or Judy I think). How can they be duplicated? The aliens don't have ability to know who were there, or they wouldn't have questioned Smith about the crew. Also, they do not know Smith and Will are hiding. So, they don't arm to have any special power to know beyond what they actually observe.