Factual error: When Brendan Fraser comes out of the Louvre, the Eiffel Tower is right in front of it. The Louvre and the Eiffel Tower are miles away from each other.
Factual error: In the scene where the fireflies light the fireworks there is one problem: The chemical that creates light wouldn't ignite the wick on a firework.
Deliberate mistake: Manny refers to the pirate rabbit as the Easter Bunny, even though Easter never existed in prehistoric times. (00:33:55)
Suggested correction: And mammoths didn't hang out with sloths and smilodons either. It's creative license.
Factual error: During the plague when the fire and rocks are falling from the sky, they fall behind a statue of Rameses and are seen through its hollow eye holes. It makes for a great image, but that would mean that the statue's eyes were punched out like a mask, even though before they were just carved into the stone.
Factual error: In the sequence where the animals get on the first subway, it says they are on the 59th St subway. But, there is no 59th St subway in NY. The only subway station close to 59 is the 57th St subway.
Suggested correction: While the other correction lists a 59th street, that's in Brooklyn. There is one in Manhattan though, 59th - Columbus Circle, which is also the south-west corner of Central Park.
Suggested correction: There is definitely a 59th street subway station: https://en.wikipedia.org/wiki/59th_Street_ (BMT_Fourth_Avenue_Line).
Continuity mistake: Look carefully at the brochure Frank has about the Buffalo Chicken Wing festival, the building pictured is the same building as his daughter's school (seen earlier in the movie).
Suggested correction: While the buildings might look similar, they are different buildings. The school has 3 levels with rectangular windows with a pyramid top while the building in the brochure only has 2 levels of non-rectangular windows and more of a dome shape on top.
Continuity mistake: Lady is put in her bed and the master leaves the kitchen but he goes back in and puts a newspaper on the floor and leaves again but Lady gets out of her bed so the master comes back once more and puts her back in her bed but the newspaper on the floor has vanished.
Continuity mistake: When Dr. Doppler and Jim first observe their ship, Dr. Doppler is right next to Jim when he points it out. When the shot changes to a long shot, they're much farther apart. (00:16:55)
Continuity mistake: Belle and the Beast are ice skating, but when Belle falls onto the snow, her ice skates have turned to brown boots. (00:08:50)
Revealing mistake: In the scene where Rocky and Bullwinkle are walking through the university with Kenan and Kel (right before they come across the anti-moose protest), Kel's right arm passes through Rocky's left several times.
Continuity mistake: When Rango was at the mayor's office, the mayor grabs out a jug of water, and he opens the lid. But in the next shot, the lid is sealed again.
Continuity mistake: When Tiger and Fievel are doing their musical piece, Tiger wipes off the mirror and they appear the same size. When he lays out in front of the mirror, singing the line "We'll be there to pick each other off the floor", he places his head next to the cage bottom, still laying on the floor between them. In the mirror, however, that cage bottom is not reflected at all. (00:57:30)
Continuity mistake: When Wilbur is meeting Charlotte's three daughters in the barn entrance, the medal that the farmer hung there keeps appearing and disappearing between shots, though the duration of the scene.
Continuity mistake: When the Were-Rabbit jumps through the stained glass, the right ear is pointing to both dragon wings. But when the Reverend is telling his tale, the glass break is is pushed way over and the hand print is now where the ear print should be. (00:24:55 - 00:28:15)
Factual error: During the song where Mowgli and Balo are dancing together with other animals, there are several hippopotamus also dancing. This is impossible, as hippopotamus are native to Africa, and the movie is set in India.
Revealing mistake: When Kadaj kneels in front of Rufus Shinra, watch his sword. As he kneels, it goes through the floor.
Factual error: In the opening short "Pikachu's Rescue Adventure," in the Bellossom song and dance shot, a Poliwhirl calls itself a Poliwrath. This is obviously a mistake because of the body differences between the Pokémon.
Plot hole: There's no visible evidence that Team Rocket has taken away Ash, Misty, and Brock's Poké Balls when the gang was in the cage, so why don't the Trainers call out their Pokémon (Brock's Onix would've helped out very much) and escape the cage?
Continuity mistake: When Oscar is at Sykes' desk he throws a load of documents at Oscar and when he piles the up in the first shot there are very few, but in the second shot there are three times as many. (00:13:10)
Continuity mistake: During Stoick's funeral Hiccup first shoots an arrow towards the ship and then the other characters draw their bows. Gobber is not shown as he is further away. In the next shot where they shoot their arrows, Valka and Eret are suddenly further apart from each other and Gobber has moved closer in between them. Eight arrows are shot simultaneously, but only seven arrows rain down.