Factual error: During the plague when the fire and rocks are falling from the sky, they fall behind a statue of Rameses and are seen through its hollow eye holes. It makes for a great image, but that would mean that the statue's eyes were punched out like a mask, even though before they were just carved into the stone.
Factual error: Ramses' sphinx was established in record time. Given the time between Moses' leaving Egypt and his return, there would not have been enough time for that Sphinx to be constructed. If the movie had conveyed the 40 year span between Moses' leaving and his return, the construction of that Sphinx would have been probable.
Suggested correction: There is nothing in the film to indicate that Moses hadn't been gone for forty years or more. He looks younger than that, but many people lived longer in those days, so Moses might look younger than he really is. It is not stated in the film how many years took place between Moses' flight from Egypt and his return, so it is impossible to say whether or not it was less than forty years.
Modern research suggests it may have taken much less than forty years to construct the Great Sphinx Of Egypt. Archaeologists have spent much time trying to establish how long it might have taken the Ancient Egyptians to build the great monuments, temples and structures of Pharaonic Egypt, considering the resources, manpower and technology available at the time. This has also been examined by modern engineers who have practical knowledge of the problems that people might have been faced with in building such incredible structures. It is uncertain if there will ever be any fully accepted consensus, but there is now general agreement that the Ancient Egyptians were highly intelligent and might have been able to build these structures in a relatively short time. The website interestingengineering.com has a webpage about the Great Sphinx, and it, quite credibly, suggests that a workforce of one hundred people could have constructed the Great Sphinx in a mere three years.
Continuity mistake: After Moses accidentally kills the guard at the temple, someone points out Moses as the killer and they point straight up. However, we see a shot from behind Moses while he stares at the fallen guard and the angle in that shot between where Moses stands and the fallen guard and the crowd around him is inconsistent with the scene where someone points Moses out. The body and group have moved from just below the scaffolding to several feet away.
Continuity mistake: When Moses saves the little girls from the men at the sheep heard, he slaps their camels to make them run. The next shot shows the camels much further away from Moses than they would have had time to run in the time between shots.
Factual error: Aaron is not shown helping Moses in convincing the pharaoh to let the Jews go. He is also not shown doing all the miracles Moses did in the movie (fun fact, he did those miracles, i.e turning the staff into a snake, turning the Nile into blood, etc.) not Moses.
Suggested correction: Differences from the source material are not mistakes. This is an adaptation of the story where Moses performs the miracles without Aaron.