Six Forgotten Warriors Chapter 4: The Six Fight Again - S5-E5
Character mistake: When the Red Skull reemerges from the vortex, he sees Chameleon and acknowledges him as his stepson. However, only moments before this, Kragov explicitly stated that the Chameleon was more like an adopted son to the Red Skull.
Spider Wars, Chapter 1: I Really, Really Hate Clones - S5-E12
Character mistake: When the group of Spider-Men are breaking into the Kingpin's building through the front door, Octo-Spidey uses a laser to cut a circle in the door and then proceeds to tear the door off its hinges with his robotic arms. Since he was just able to simply tear the door off, there was no need for him to cut the hole in the door in the first place. It's not like he needed to reach through the hole with one of the arms to unlock it from the other side.
Spider Wars, Chapter 2: Farewell Spider-Man - S5-E13
Character mistake: When Stan Lee is asking Spider-Man what he plans to do after saving all of reality, he responds by saying to find the real Mary Jane. Moments later in the final scene, Madame Web tells Spider-Man that she is taking him to find the real Mary Jane, which elicits an incredulous response from Spider-Man, as if he didn't know that was already the plan.
Answer: Yes. Many things that would have been in the sixth season would have had Norman Osborne returning from limbo and reclaiming the title of the Green Goblin, Richard Fisk, the son of "The Kingpin" Wilson Fisk would return as a crime lord known as "The Rose", Ghost Rider would have appeared to help Spider-Man stop Dormammu from returning to Earth and Madame Web and Spider-Man would rescue Mary Jane from limbo.