Dream Logic - S2-E5
Factual error: When discussing whether Dr. Nayak's server could have been hacked, Agent Broyles says there was "no sign of a DDoS attack." A DDoS (Distributed Denial of Service) attack is not a means of hacking into a server to alter data - it refers to flooding a web site with so many connections, through automated means, that legitimate visitors can't connect to it. It's a mode of attack that has no relevance to the situation they were discussing.
Answer: In the time line of Season 4, William Bell is trying to destroy both universes to create a new one, and he needs Olivia to power the collapse. So he helped her escape. But the real question is, if not in search of Peter, why Olivia has to travel to the alternate universe to be captured and replaced?
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