Normal Boy/Birth of a Salesman - S1-E3
Plot hole: Throughout the show, many characters state that Jimmy was responsible for the meteor almost destroying Retroville in the episode "Normal Boy", however, how would anyone even know that? The meteor was put on course after being hit by some kitchen objects shot into space by Jimmy's orange juice machine. Neither Jimmy nor his parents or anyone saw the objects go into space, much less witness them causing the meteor head straight to earth, especially since the meteor wasn't detected until the next day.
Plot hole: If Carl is allergic to dead things, then why isn't he allergic to his dead fish Swimmy?
Suggested correction: Swimmy came back to life.
The Evil Beneath/Carl Weezer, Boy Genius - S3-E13
Plot hole: In "The Evil Beneath", after Jimmy, Carl, and Sheen escape Dr. Moist's secret lair, they fly back in the hover car where they start seeing some evil fog shadows, and take off. Earlier, being out of fuel was the cause of the hover car's crash landing, but somehow it's been refilled to escape.
Suggested correction: The hover car's crash landing was due to engine failure, not being out of fuel.