Revealing mistake: Whenever you glimpse the inside of the TARDIS from outside, a frontal view reveals a picture of what's inside which has been placed at the back of the box. Sadly, it isn't on the sides. This means that, from the right angle, you can easily tell that it is just a box.
Continuity mistake: Throughout series 5 and series 6, The Doctor's hair style keeps changing sides.
Chosen answer: 1) When Stephen Moffat took over he ignored a lot of what had been developed before (there is not in-universe answer). 2) It would have killed Rose, so the Doctor absorbed the energy. His body regenerated before the energy could do a significant amount of damage that would prevent regeneration.