Revealing mistake: When the Cyberman arm is shooting at the Doctor and Amy, just after the Doctor jumps out to draw its fire, Amy leans on the Pandorica and you can see it bend in, revealing that it's made out of plastic or something. (00:20:42)
Revealing mistake: As Amy stands where she is told, a cable comes towards her feet. As it does, a black thread can be seen pulling it up to wrap around her leg. (00:21:39)
The Doctor: I'm not... I'm not... I'm not from Mars!
Question: 1. Why was Rose not allowed to touch her past self without creating a paradox and causing those creatures to appear and eat everyone, but Amy was allowed to touch her younger self without any repercussions? 2. Why was Rose able to have the time vortex in her head for a few minutes and it only knocked her unconscious whereas the Doctor had it inside him for about 30 seconds and it basically killed him and caused his regeneration?
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Chosen answer: 1) When Stephen Moffat took over he ignored a lot of what had been developed before (there is not in-universe answer). 2) It would have killed Rose, so the Doctor absorbed the energy. His body regenerated before the energy could do a significant amount of damage that would prevent regeneration.