Visible crew/equipment: While Andy and Otis are talking about women Barney opens the door and rushes into the courthouse, and behind him we can see a crew member's hand (looks like a woman wearing bracelets) catching the door as Barney swings it shut.
Visible crew/equipment: When Otis tries to escape from Aunt Bee's clutches by hiding in the laundry service van, just as Aunt Bee has the driver open the van's back doors we can see the reflection of the moving boom mic in the left window.
Visible crew/equipment: When the squad's siren gets stuck blaring, a crowd gathers around the squad with Andy, Barney and Rogers, and when the crowd disperses we can see at least three chalk T-marks on the ground.
Visible crew/equipment: At the Scobey house, after Ben sits in the unstable chair and it breaks, when Andy and the Scobeys rush over to him we can see the two curved chalk actor's marks on the floor, where Ben had been standing moments before.
Visible crew/equipment: When the new manicurist tells Floyd that she works only on commission, she lifts the small table and moves it to the window, and we can see the actor's tape mark where she had just been standing.
Aunt Bee's Big Moment - S8-E23
Visible crew/equipment: After Aunt Bee's solo flight, just as the flight instructor walks over and gives Bee the papers as proof that she soloed, the large T-mark (rubber/plastic) is visible on the ground between Bee and the instructor.
A Plaque for Mayberry - S1-E25
Visible crew/equipment: While everyone's waiting for Otis to arrive at the plaque presentation in Mayor Pike's office, after Andy admits to the mayor that he asked the real Otis to show up, it cuts to the mayor walking behind his desk, and we can see the chalk T-mark on the floor where Mrs. Bixby stands.
Runaway Kid - S1-E6
Visible crew/equipment: After Andy talks to George's father on the phone, he gets up and stands near the fireplace while explaining to Opie why he broke his promise and called George's father, and when Opie's on the couch asking if he can run off sometime, we can see the white tape mark on the rug where Andy was standing moments ago.
Visible crew/equipment: While Ollie's making up excuses to rush home, he and Nora are saying goodbye to Aunt Bee, and the reflection of the moving boom pole and mic are visible on the car's windshield.
Visible crew/equipment: At the start of the last scene, when Andy and Rogers walk out of the courthouse the reflection of a crew member is visible on the surface of the car, and as Rogers drives away we can see the reflection of the camera dolly on the car, and also the shadow of the boom mic on the ground.
Aunt Bee's Big Moment - S8-E23
Visible crew/equipment: After Aunt Bee tells Opie that she will solo the next day, when she sits in the chair to practice her flight maneuvers, the actor's tape mark is visible on the floor beside her feet.
Visible crew/equipment: After Barney tells Andy that the stranger may be a foreign spy Ed Sawyer walks into the courthouse, and behind him a crew member's hand can be seen catching the door just as the door closes.
Visible crew/equipment: When Clara and Opie first sit down at the piano to begin the piano lesson, note there's nothing on the floor behind them. Then that shot cuts to the end of the lesson as the camera pulls back for a wideshot, and now there are two tape marks on the floor near the door in the area where Opie and Aunt Bee will be standing shortly. (00:04:15)
Visible crew/equipment: When Andy walks into the barber shop while Barney's complaining to Floyd about his sideburns, we can see the white T-mark on the floor at the bottom of the screen, as well as chalk marks where Andy's standing.
Visible crew/equipment: When Rogers shows Andy the statistical chart and they get a call about the domestic violence, the two chalk marks can are visible on the floor below the bulletin board to its left, which is precisely where both Rogers and Barney have stood at different times during this scene.
Andy and the New Mayor - S3-E3
Visible crew/equipment: While Jess is up in the tree, the new mayor is attacked so he also starts climbing up the tree, then in the shot of the bear rushing toward the camera we can see the animal trainer who's behind the tree, as he releases the bear. (00:23:00)
Visible crew/equipment: While waiting for Barney to show up at the surprise party, Opie looks out the window and spots Barney, then when Aunt Bee and Thelma Lou take their places we can see both actors' marks on the floor - the chalk T-mark and the curved chalk mark.
Visible crew/equipment: After Opie tells Ellie everything that Andy told Aunt Bee, Ellie tells Opie that she's on the trail of a baboon, and when it cuts to the next shot of Ellie coming down the stairs we can see the chalk T-mark on the floor where she stands.
Visible crew/equipment: After Ellie and Andy are turned away by Flint, when they walk back into the courthouse while Barney's lifting the chair, the chalk T-mark is visible on the floor.
Visible crew/equipment: When 'FBI Agent' Jenkins congratulates Andy and Barney on behalf of J. Edgar Hoover they're all standing near the door, but when it cuts to Jenkins turning around and they all walk over to the desk, we can see the two curved chalk lines on the floor where Jenkins' feet were positioned, as well as the curved chalk marks on the upper step where the mayor was standing.
Answer: Those "boxes" are valences that used to be very common, before air conditioning. They allow for windows to be open during rain storms. They permit air circulation, without letting the rain in.