Continuity mistake: Right after Cordelia has her vision, Wesley goes to the whiteboard. In the "Case" column he writes "N.D.U.O." Underneath what looks like "CARYNSS" crossed out. But once they find out that it is a Prio Motu demon and Angel writes it on the whiteboard, "N.D.U.O." disappears even though Angel did not rub it off.
Continuity mistake: When Angel writes "Prio Motu" on the whiteboard and says that they need to find it and narrow it down to somewhere, Wesley says "I may be able to help us with that." In the immediate closeup of Angel, his stance has suddenly changed. In the previous shot he was standing with his arms straight down and his hands close together, but in the closeup they appear to be as though he has his hands on his hips.
Answer: Due to his epiphany, Angel basically had the 'true darkness' he worked so hard to reattain ripped away from him, like his soul was after sleeping with Buffy.