Deliberate mistake: Gandu Three Echo, the clone who hits the screen showing the first lottery winner in the movie, complains that he has been around for 7 years and never won the lottery. However, McCord explains later in the movie that the last name tells how old the clones are. Lincoln Six Echo is 3 years old because he is in the Echo generation, and the Delta generation (Jordan Two Delta) is 4 years old. Going backwards, this would make Charlies 5 years old, Bravos 6 years old, and Alphas 7 years old. Gandu Three Echo should have really been Gandu Three Alpha. (00:05:55)
Visible crew/equipment: When Sean Bean puts the microbes into Ewan McGregor's eyes, the crew is reflected in his glasses. (00:15:05)
Audio problem: When Lincoln 6 Echo is watching the the surgeons kill the other 'product' after giving birth, her heart monitor flat-lines well before the sound does. It beeps about 4 times before the shot changes to a closeup of the flat-line. (00:34:50)
Deliberate mistake: The shot of Jordan and Lincoln asleep in the ruin is flipped. You can tell by Lincoln's initials on his ankle. (00:56:15)
Continuity mistake: When Mac, Lincoln and Jordan are driving to the railway station. Mac takes the credit card out of Jordan's hands, however in the next shot, Lincoln is already holding it. (01:04:30)
Factual error: When the first train wheel hits the ground in the close up, you can see that it isn't made of steel as it deforms as if it were foam. And there is also no damage to the concrete road whatsoever, since the wheels are made of steel there should have been quite a big hole. (01:17:50)
Visible crew/equipment: When the first train wheel falls down you can see a cord attached to it, in the next shot the cord is gone. (01:17:50)
Continuity mistake: The first train wheel which falls down from the truck hits the ground twice. (01:17:50)
Continuity mistake: When they are driving behind the truck, a flat piece of metal falls off. Shortly before it hits the car it is "flying" horizontal (20°) however in the next shot, when it hits the car it is suddenly vertical (90°). No time between the two shots for that immense change. (01:18:30)
Continuity mistake: The Black Wasp shoots out the truck's right front tire, but the subsequent shots show the truck's left front tire blowing out and the right tire intact. (01:19:50)
Continuity mistake: Two members of Laurent's team are in the elevator going up to the 70th floor of a rather tall Gas Company Tower in LA (the building with the giant "R" logo; presumably the building's height has been raised) to go after Lincoln and Jordan. When they step out of the elevator, the display inside says "70," but the floor number outside the elevator says "L," indicating that they're actually on the lobby floor. (01:23:00)
Visible crew/equipment: When Tom Lincoln runs up the stairs to get his shoes and opens the door to his room, you can see a cameraman reflected in the glass. (01:34:40)
Continuity mistake: When Tom and Six-Echo are in the car near the end, the chopper shoots down the traffic lights in front of them. When Six Echo drives off again, he drives straight with no problems. (01:37:40)
Continuity mistake: After Jordan frees herself from the surgery room, she walks around and looks at a map that she is holding in her hands. The camera then switching to a closeup of the map, but in that shot, the map is being held by male hands instead of female hands. (01:52:51)
Continuity mistake: When Lincoln and Jordan are running to the Zone 6 door during their escape Lincoln throws a person into Jordan knocking her down. However in the next scene she is miraculously right behind Lincoln again.
Visible crew/equipment: At the end of the freeway chase, when Laurent steps out of the passenger side of his car, a camera and several crew members are reflected in the door of an approaching vehicle.
Continuity mistake: When the mother is being poisoned shortly after giving birth, we see a toe tag on her right big toe; in the next shot, the toe tag has moved to her left foot.
Continuity mistake: When the clones are in Lincoln's house he takes a drink. When he picks up the bottle, we see the label, but when starts to drink, the label isn't visible anymore and the time is too short to turn it.
Continuity mistake: In the scene with the accelerating fan, there is a shot of the speed dial going towards the maximum. It then cuts to the fan speeding up. When it returns to the dial, the needle traverses the exact same distance that it did before.
Continuity mistake: When the row of train wheels is first shown rolling off the back of the truck, it has a flat sheet of metal on top of it. In the next shot, the sheet is gone. And in the next shot (when the wheels hit the road), it's back.
Answer: We saw them set free, so assume beyond that what you will. If we apply current reality to it, we can guess the sponsors lost their money, as the venture was entirely illegal to start with. The government would gain nothing killing them, so they likely would issue new Social Security numbers to them and start collecting taxes ASAP. If you must have a definitive answer to 'what happened next', you can always wait for a sequel.
johnrosa