
Plot hole: Al Simmons' reasoning for wanting to quit A-6 is because he learns his rocket attack in his assassination mission in the beginning of the film yielded civilian casualties. This makes no sense, as he blatantly gunned down several innocent men in the air control tower just moments before.

Plot hole: When Jim is shown what he has to pay for the damages Herbie did to Mr. Wu's shop he says he has no money. First off if he had no money how in the world was he able to put down any money on the red sports car he had just purchased that night? Secondly, what happened to the prize money from all the races he was winning from the previous few months?

Plot hole: The Chinese army displays a great variety of (often anachronistic) weapons and they spent considerable resources arming and reinforcing the Great Wall to challenge the beasts who have been plaguing their land every 60 years for thousands of years. but despite having records of magnets being effective against them, with magnets being well known to them for centuries (early magnetic compasses were available in the IV century BC, and the movie is set in the XI century) they made no use of that at all.

Plot hole: The Mummy would not know where to crash the plane in England to retrieve the dagger from the Abbey as this was placed there thousands of years after her imprisonment. If she did know it was there using her powers she would know that the stone was missing, but she didn't.
Suggested correction: Ahmanet did know where to crash the plane. She had the ability of sensing the dagger. Jenny even points out to Nick that Ahmanet knew where to find it. Ahmanet's powers are not fully explained but, since she could sense the dagger, she probably thought the stone was still with it but didn't know until she tried to stab Nick. Later, when the Prodigium agents find the stone, Ahmanet could not only sense it but, told Jenny it was found.

Plot hole: When Sully and Mike are talking in the toilets, during Boo and Sully's Hide and Seek game, Boo comes running in screaming and upset because she's just seen Randall, and he's not too far behind since all three can hear him talking offscreen to the CDA before entering the toilets, but how did Boo get to Sully faster than Randall without him seeing her, and how did Randall not hear her screams since they're all in the changing rooms which have an echo?

Plot hole: In one of the late scenes Logan is interrogated by the mainframe computer, and is guarded by two other sandmen. No one in the city is allowed to be over thirty years of age, yet the guards are at least in their late 30s or early 40s.
Suggested correction: How do we know how old they are? Just because someone may look like they're in their 40s doesn't mean they are. I have several friends and coworkers who look older than their actual age.
I also thought the guards looked old. Yes, maybe they were 29 but since they had a minimal role, it wouldn't have been difficult to go with actors that actually looked like they were in their 20s.

Plot hole: When the chipmunks finally release their first song, there is a montage showing the chipmunks rising musical success. In one shot we see a marquee promoting "The Chipmunks Premiere CD Release", and on it is a picture of the chipmunks in the clothes Dave has made them (note Alvin in his 'A' jumper.) However, Dave doesn't actually make the chipmunks these clothes until further on in the film. (00:41:50)

Plot hole: Near the end of the movie, when Mr Potts finds out that he's going to be rich (Mr Scrumptious wants to buy his invention) and he rushes out to his car to go see Truly, he meets her en route and she's got her hair in an really elaborate style and has changed. But there is no way she could have possibly got to her house, found out that her father had gone to see Mr Potts to buy his invention, changed her outfit, done her hair like that and gone out to see Mr Potts in the short amount of time between Mr Potts and his children dropping her off, and Mr Potts and her meeting at the pond.

Plot hole: At the end, Jake utilizes multiple Loops to reach September 4th, 1943, the date from which Miss Peregrine's children impossibly entered another Loop set in the winter at the beginning of 2016. The closest date prior to this was in 1942, from when Jake waits for September 4th 1943 to arrive. However, having entered a Loop in 1942, he would have been unable to reach 1943 because he'd be stuck living the same day in 1942 over and over.
Suggested correction: Is it possible he left the loop while in 1942? The movie doesn't directly address that idea.
It does address this, actually. He'd have reentered the true time period upon exiting the loop. I suppose he could have prevented the local ymbryne who created the loop from resetting it, but if he did, he'd have doomed all those peculiars in the process. Not something Jake would do.
Several of the ymbrynes had been captured. It is very likely that the one who created that loop had been too, so the loop would have closed, and he could've lived in that time period.

Plot hole: The wolves seem to conveniently make an appearance to further the story, only to disappear in other parts. They are there for Belle's dad at the beginning and Belle when she tries to escape the castle initially. When Belle's dad leaves the castle after Belle takes his place and when Belle is freed to save her dad, they are not there.

Plot hole: Luka sneaks into Bayonetta's hotel room and plants a hidden microphone. While sneaking out, he is caught. That's when he is astonished to find a child with Bayonetta who calls her "mummy." He does eventually escape the room and sits in corner with his radio, surprised that they both went to bed and he receives nothing. The problem is: One must be an idiot to plant a mic in a lone woman's hotel room in the dead of the night, unless he truly enjoys listening to her snoring! Planting the mic in her apartment or office, or on her mobile phone makes a lot more sense.

Plot hole: Although this film is a virtual jigsaw puzzle of flashbacks, the dynamic between Dan, Laurie and Rorschach pretty much defines the movie's continuity in the present. However, when Rorschach is framed for murder and arrested, he goes directly to a maximum-security prison, apparently without trial, conviction or sentencing (all of which would require months of due-process, at least). Even if this lapse of time is some sort of artistic device to rapidly advance Rorschach's story, there is no corresponding lapse of months in the relationship between Dan and Laurie, which runs parallel with Rorschach's story. Either there is no due process for Rorschach in this story, or there is a glaring plot hole.
Suggested correction: Rorschach was a famous and dangerous outlaw. We are talking about an alternate 80's here with Nixon as president and a nation-wide ban on masks (the Keene Act). Rorschach probably faced the death penalty for his long list of crimes, besides the murder he was finally captured for (not to mention to handful of cops he seriously injured whilst trying to evade capture). I don't think it's strange that his trial was quick or not fully by the book. They made sure he was locked away fast and quietly. The justice system probably works a lot faster in a world of masked vigilantes.
Yes, Rorschach was a vigilante; but, before masked superheroes were outlawed, Rorschach was also responsible for sending dozens (if not scores) of far worse criminals to prison, thus benefitting society. This much is stated in the film. His contributions to justice would certainly carry weight, and testimony in his favor would have to be considered in any legal proceedings against him. Also, after his capture, authorities were still trying to assess his mental state, which implies that some sort of due-process was still in place. Rorschach should have received a months-long trial, at the very least.
To be fair, the original, Hugo Award-winning "Watchmen" graphic novel makes the same continuity leap when it comes to Rorschach's fate. Rorschach keeps a secret diary that dates everything, but it egregiously skips over his trial and sentencing, even though the relationship between Dan and Laurie remains consistent. So, we can say that the movie is faithful to the novel, but the novel itself is flawed with a gaping plot hole.
The cops of that city don't care about his past deeds, which includes dropping the body of a criminal in front of the police station with the message "Never." They don't like him. Not even his colleagues liked him. That was a long time ago too, he's been the sole masked vigilante for a long time and I bet the cops just started disliking him more and more for his antics. Thus, a quick trial.

Plot hole: I can somewhat understand that in a kiddies' show all aliens can inexplicably speak English - but using Terranean (i.e.: Arabian) numbers as well? While Tetrax's computer uses alien runes, the readout on Gluto's holographic HUDs use Arabic numbers - somewhat a bit too deliberate a producer choice to emphasize intergalactic communication.

Plot hole: If the curse counts an eclipse as night, then Navarre should have turned into a wolf during the eclipse. If the curse does not count the eclipse as night, then Isabeau should have remained a hawk. In neither case would they both have been human at the same time.
Suggested correction: That is the whole point; it is neither day nor is it night. Each only suffers the curse when it is specifically day or specifically night. Any time it is not one of those two events, the curse is not active, as shown earlier in the movie when both are human for seconds during a time in between day and night.