The Girl in the Gator - S2-E13
Visible crew/equipment: At the start, the ice cream van stops and Booth shoots the clown. If you look at the road there is an orange tape marker visible where the van stops. (00:02:15)
The Boneless Bride in the River - S2-E16
Visible crew/equipment: Bones asks Sully if he can afford the boat, and he turns to look around the boat. When he does a mic pack is visible attached to his belt. (00:05:10)
The Boneless Bride in the River - S2-E16
Visible crew/equipment: When examining the hip bone for the 1st time, behind Booth on the floor is a black tape marker level with the ladder. (00:19:50)
The Boneless Bride in the River - S2-E16
Visible crew/equipment: When talking to the directors of the funeral home, Booth stands up from his desk and walks behind the 2 people. As he does so, a blue tape marker is visible on the floor by Booth's desk. (00:29:50)
The Boneless Bride in the River - S2-E16
Visible crew/equipment: When we first see both sets of remains on the table at the Jeffersonian, Angela walks up to the tables and a tape marker is visible on the floor by her feet. (00:31:40)
The Boneless Bride in the River - S2-E16
Visible crew/equipment: As we see Sully sail off into the sunset on his own, a hand and head can be seen on the boat with him despite a key point being he is on his own. (00:40:40)
The Glowing Bones in the Old Stone House - S2-E20
Visible crew/equipment: At the start as Bones says about how Angela turned Hodgins down, there is a clear shot of Bones' top and a microphone visible just inside it. (00:01:00)
The Glowing Bones in the Old Stone House - S2-E20
Visible crew/equipment: When Booth is in the kitchen at Carly's talking to the husband who is going over the books of the restaurant, a tape marker is visible. (00:18:30)
Answer: Answering my own question here but, having contacted various people involved in the production of Bones including Kathy Reichs, Hart Hanson, Eric Milligan, and Deirdre Lovegood who portrayed Taffet onscreen I finally have the answer. No-one know how she did it due to her constantly working alone. And she never revealed this information before her death.
Ssiscool ★