Utopia (1) - S3-E11
Character mistake: When the Futurekind spy starts sabotaging the silo's systems, and Chantho notes that they're losing power, she says, "We're losing power-tho!" - forgetting the "Chan-" prefix that she starts anything she says with, in order to not swear by her species' standards. (00:27:00)
Chosen answer: 1) When Stephen Moffat took over he ignored a lot of what had been developed before (there is not in-universe answer). 2) It would have killed Rose, so the Doctor absorbed the energy. His body regenerated before the energy could do a significant amount of damage that would prevent regeneration.