Plot hole: In episode 4-16: "Lucy," there is no reason for the criminals to be chasing Lucy on the ski slopes at the beginning of the episode. We learn later that she's been working with them all along; she calls Lois during the chase, and the call is part of Lucy's plan with the criminals. Lucy being chased by the criminals would make sense given the story she gives Clark during the next part of the episode, but it doesn't make sense for what we ultimately learn is the truth. And nobody from Smallville is anywhere near the ski chase, so it also doesn't make sense as any kind of a ruse.
Smallville (2001)
1 plot hole in Lucy - chronological order
Other mistake: Lois digs up Chloe's grave site to unearth her casket. It is obvious that the casket is not buried six feet deep. You would think, with all that is going on, that LuthorCorp would have at least buried the casket deeper to deter inquisitive eyes and maybe throw in a few scattered bones for good measure.
Martha Kent: Clark? What are you still doing out here?
Clark Kent: Well, I'm still doing my chores.
Martha Kent: Well, you usually finish those in about two minutes. How is it that I drove to Metropolis, attended the Children's Foundation dinner, and made it back before you finished?
Clark Kent: Because I'm doing them the normal way.
More trivia for Smallville
Question: Throughout the series, people mutate fairly soon after their exposure to kryptonite. Is it ever explained how Lana has managed to wear a piece of kryptonite around her neck for 12 years and not change?
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Answer: The kryptonite only creates mutations when it reacts with the environment and an individual. Remember, the FDA and several environmental groups did check out Smallville after the meteor shower, but found no danger in the rocks. Obviously they're not always emitting mutating rays, or all the flora and fauna of the surrounding area would be horribly mutated.
Phoenix