Plot hole: Jo is surprisingly skeptical about the TARDIS being able to move, considering she saw it dematerialise in the last episode.
The Daemons - S8-E5
Plot hole: It is never explained who - or what - killed the man in the churchyard during the first scene (early in part one). It cannot be Bok (the gargoyle) or Azal (the Daemon) as neither of them have awoken.
Answer: It was never destroyed on-screen; it was intact at the end of the TV movie, and destroyed by the start of the 2005 series. It was destroyed in the novel "The Ancestor Cell," but in a completely different manner to what happened in the series.
DaveJB