
Plot hole: The Brigadier says UNIT HQ is 'a Top Secret establishment'. It is, in fact, so secret that it has a large sign outside informing the world not only of its function, but also the name of the commanding officer.

Plot hole: After UNIT HQ disappears, you can see a patch of grass where the UNIT HQ used to be...but just exactly how can grass grow underneath a building?
Answer: TARDISes are generally available for properly authorised use on Gallifrey; they're not usually assigned to a particular Timelord on a long-term basis. The Doctor stole his when he left his homeworld.
Tailkinker ★