Deep Metal - S3-E2
Continuity mistake: Depth Charge fights Rampage on the beach. Throughout the whole episode, Depth Charge has four fingers. But in a shot when DC doubles over in pain to clutch his wounds, he has five fingers.
Code of Hero - S2-E9
Continuity mistake: When the Maximals are disintegrating Dinobot's remains, Rattrap can be seen in his original form when he should be transmetal.
Continuity mistake: In the 3rd season episode "Nemesis, Part 2," one shot of Dinobot gasping at Tigerhawk's demise is flipped; his laser eye is supposed to be on his left.
Continuity mistake: In the episode "The Web", the tarantula has Cheetor trapped in a stasus web that sucks the energy from his life force and is viewed on a machine. A couple of scenes later, Cheetors life bars are very low on the machine, but when Rattrap comes to save him, the bars are full again, although Cheetor is still dying.
Continuity mistake: At the very end all the Maximals are together watching the mountain explode, but when Primal yells "Beast Wars" the camera quickly zooms away and only he and Dinobot are standing there, the others have disappeared.
Coming of the Fuzors (2) - S2-E3
Continuity mistake: During the battle at the beginning there is a shot of Tarantulas and Waspinator appearing with Megatron commenting on how reinforcements have arrived implying that they had just got there. The problem is, the previous episode already established them as having arrived before the battle had begun, and they had even been shown fighting before their suppossed "arrival" mid battle.
Chosen answer: Terrorsaur was probably removed because his character was far overshadowed by Tarantulas. Both characters were treacherous and backstabbing towards Megatron, but it wouldn't have made sense to have two characters who served the same purpose, story-wise. Scorponok was removed because they wanted to introduce Quickstrike, and it wouldn't have made sense to have two scorpion characters on the show.