Plot hole: Scully's statement that she was 23 when she wrote her senior thesis in college throws off her timeline of college, med school, residency, FBI Academy, Quantico teaching assignment for two years, and X-Files assignment at 28. Her undergraduate degree in Physics should have been completed when she was 20 or 21 to allow at least 4 or 5 years for her medical training. (00:41:35)
The X-Files (1993)
1 plot hole in season 4 - chronological order
Starring: Robert Patrick, David Duchovny, Annabeth Gish, Gillian Anderson, Mitch Pileggi
Factual error: Mulder refers to a Royal Navy vessel that sailed from Leeds. No large ship can sail from there - it is at least 50 miles from the coast.
The Post-Modern Prometheus - S5-E5
[After spilling coffee on his lap.]
Mulder: Great, now my crotch will be up all night.
Trivia: The initial footage of the episode was taken from the movie Airport 1975 (a Columbia Airlines jumbo jet). (00:00:01)
Question: In a vast majority of the episodes, whenever Mulder and Scully investigate some mysterious or paranormal phenomenon, Mulder believes that some unknown force is responsible but Scully always has a rational explanation for what is happening. In other episodes, when Scully herself is caught up in something mysterious, she is the believer but Mulder is the skeptic. In those episodes, why would Mulder be skeptical about an unexplained phenomenon considering that he a was witness to his own sisters abduction and he saw many strange things that defied explanation while working for the F.B.I.?
Answer: A variety of reasons. Just because Scully saw something unusual does not mean that it was. Mulder always needs concrete proof before he'll believe there's some otherworldly explanation for unexplained phenomena. He's too experienced to take a novice's explanation as fact. It is also a plot by device by the writers to switch the tables on the characters to make it more interesting and to let viewers see another side of their relationship.
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Answer: As he stated many times throughout the series, Mulder needed Scully to be sober and skeptical. Whenever Scully's skepticism wavered and she started questioning her own rationality, Mulder would try to restore her sense of skepticism, because he needed her to be clear-thinking.
Charles Austin Miller