Plot hole: After the bird is hurt, Jimmy is shot several times and wounded very badly. Yet just seconds later, he is able to save the young boy, and mysteriously use many of his "crow powers" despite being hurt very badly.
Plot hole: Why would Pestilence let himself be soaked in toxic chemicals in the beginning of the movie when he is out for revenge? It makes no sense that he could possibly be killing himself then and there when he wants to live a little longer.
Plot hole: "Death" tells his cronies to burn the bodies of Jimmy and Lily, yet when they get to the junkyard, they put the bodies in a very heavy refrigerator, and then push it into a pool of flammable liquid, which they burn. But it could never burn through the thick metal and plastic of the fridge before it burned the bodies.
Plot hole: Everyone considers Jimmy to be evil because he accidentally killed one of the Natives, who was trying to rape Lily. Yet, you see the ordeal and there are other witnesses, so it makes no sense that nobody believes him about not doing it on purpose, and unprovoked.
Plot hole: Why would so many toxic chemicals be used in coal mining, and used as close to the miners as illustrated in the film?
Answer: As I understand it, it all had to do with a spat between the director of the original Crow movie (Alex Proyas, who had "approval" of all the subsequent Crow movies) the producer of the Crow movie franchise, Jeff Most, and Miramax. Miramax eventually caved in favor of the producer and it was made into a "non-Crow entity" when Miramax reportedly signed Eminem to play the bad guy.