Continuity mistake: Dietrich asks, "If we refuse?" Next to him stand four soldiers in a row, looking at Indy. In the next shot, the soldier who was holding a rifle is gone, and the two with machine guns are now giving their backs to Dietrich. (01:42:52)

Continuity mistake: When Dietrich and Toht look at the ghosts that pass behind them, the column of mist that is coming out of the Ark disappears.
Continuity mistake: When Indy is entering Marhala Bar, Steve Hanson is right behind him, following Indy inside. In the next shot, Steve is suddenly standing next to Belloq (he seems to have arrived before Indy did). (00:43:08)

Continuity mistake: In the Bantu Wind, the right arm of the soldier standing next to where Indy is hiding changes its position twice during Katanga's and Dietrich's speech. (01:36:18)

Continuity mistake: As Dietrich and Gobler come into the tent, Toht's leather case can be seen already opened. In the next shot, the case is suddenly closed.

Continuity mistake: While the Holy Fire is killing the soldiers, in a shot of two soldiers being hit by the light, the stone wall is missing in the background of the scene. (01:47:30)
Audio problem: After Dietrich pours liquor for himself, he speaks to Belloq. One of the words of his phrase (probably monsieur or Belloq) was cut from the audio as Dietrich's lips still move but nothing can be heard.

Visible crew/equipment: During Marion and Belloq's beverage contest, a round klieg lamp's blue light stands behind Belloq, which sometimes changes its intensity. Also, when Marion grabs the knife, behind her a moving light can be seen (like a helicopter's light), which disappears a few seconds later. This light also appears for a few seconds when Toht frees Marion's arm.

Continuity mistake: When Marion arrives on the deck of the Bantu Wind, Dietrich turns to look at her. Katanga is in the background, behind the colonel. But, just before Marion hits Dietrich, Katanga appears on the opposite side from where he was and catches Marion. (01:36:00)
Continuity mistake: When the gunfight at The Raven begins, the Ratty Nepalese crawls next to two tables (one of them has the medallion and the log). He knocks down the one without the medallion, but in the next shot, the knocked down is the one that has the log and the medallion. (00:31:10)
Audio problem: After Dietrich says "And Gobler, I want plenty of protection", a German voice can be heard saying "Jawohl, Herr Oberst", just before the tower behind Belloq explodes. This voice sounds extremely close to the three villains, although neither of them have spoken, and there are no more people next to Dietrich.

Continuity mistake: During the procession, after Indy hides behind the box, Captain Mohler can be seen walking with the soldiers behind the Ark. In the next shot, he's walking in front of the Ark.

Continuity mistake: In the first scene of the procession, the Nazis are walking in a straight line along a path. In the next shot, they are now going around a curve.

Continuity mistake: After the kliegs behind Dietrich, Belloq, and Toht explode, the Ark's energy begins to destroy the soldiers' guns and the kliegs next to them. In some shots, the kliegs on the altar are still working.
Character mistake: In the original Latin Spanish dubbing, Dietrich calls Gobler "Glober" while walking next to the destroyed Flying Wing.

Continuity mistake: Just before Belloq says "It's beautiful!", there is a black machine (which is not the German camera or the generator) in the bottom middle of the screen, just below the approaching ghost. It is also visible when the Angel of Death is revealed. This machine disappears when the Ark begins to kill the soldiers.
Continuity mistake: When the camera shows the back of the truck, there are two soldiers on each side of the truck, plus the sergeant inside it. As there were seven soldiers and one of them fell off the truck - there's a missing soldier in the scene. (01:25:50)

Continuity mistake: When the Nazis are aboard the Bantu Wind, in the full scene of the ship deck, Toht stands behind Belloq. But, after Marion tries to hit Dietrich, the camera focuses on Belloq, then on Dietrich again. Toht is not seen anymore on the deck.
Continuity mistake: When the Nazis are loading the Ark in the truck, you can spot Toht next to the left side of the truck, watching the scene. A few seconds later, he walks out of scene, apparently going to the car. However, when Belloq and Dietrich walk to the car and Belloq shouts "Let's go!", Toht has disappeared. (01:21:45)
Answer: The scene you describe was indeed filmed. It was cut out of the US release of the film although I cannot speak for the Australian version. The scene also appears in the Marvel Comics adaptation. http://www.theraider.net/films/raiders/deleted_scenes.php has a list of this and the other deleted scenes.
Phil C.