Continuity mistake: At the beginning of the film, When Indy uses the whip to take the guides gun away, Satipo makes a weird face and starts to move away in amazement. The very next frame, in a wider shot, he is not finishing his movements, but on the contrary he is standing still, with a normal gesture, until a second later he starts to repeat the movement and looks from before.
Continuity mistake: As Indy and Marion are starting to run from the plane, you can see the yellow wheel chocks are back in place under the plane's tires.
Continuity mistake: After hitting one thug, Indy jumps out of the way of one trying to spear him, leading to the one behind Indy getting run through. As the guy gets run through, he is in front of a hanging string of fruit, with the stacked fruit to his right. After a cut scene to Indy and Marion running away, the run through thug is now facing the fruit stand, setting up the sight gag of the blade sticking out with two fruits stuck on it.
Continuity mistake: While Indy is in the Well of Souls, Belloq greets him and is standing by one of the four sides of the rectangular hole. A frame later he stands by one of the corners.
Continuity mistake: Satipo drops the whip half a meter away from the closing gate, then runs away. However, when Indy rolls underneath the door, the whip is laying right next to it.
Continuity mistake: When Indiana is hiding his face with the cloth, watch as he enters the tent that Marion is being held prisoner in - at first, Indiana has to hold it in place; in the next shot, he has it tucked into the rest of the folds. The next shot, the actual position of the cloth changes.
Revealing mistake: The Pan American aeroplane Indiana Jones boards in San Fransisco looks similar to (but has noticeable differences from) the Boeing 314 PanAm used for transpacific flights. This aeroplane did however not fly until 1938 and at the time of the story the company only flew transpacific with Sikorsky S-42s, an aeroplane with a completely different body than the one used in the scene.
Revealing mistake: When Indy is fighting the big German at the base of the airplane, Indy reaches down and grabs a handful of sand to throw in his face. You can see the finger marks in the sand from a previous take.
Audio problem: When Marion meets up with Indy on the steps of the building at the very end of the film, she asks what was going on in there. Her first few lines of dialogue were dubbed in after shooting. Her mouth isn't moving with the dialogue.
Factual error: Several times during the movie, Indy is under fire from Nazis or other bad guys wielding what look like MP-38 sub machine guns. The movie is set in 1936, 2 years before the weapon was even designed. The Erma EMP-36 has wooden parts (the grip), the muzzle spike at under the barrel is more pointy and the front sight are more massive than MP-38/40, and the magazine is tilting slightly forwards towards the muzzle. The MP-38/40 is all stamped sheet metal (no wood, because it would slow down production), the muzzle spike under the barrel is more smooth (maybe so it won't get stuck?) and the front sight is more simple (basically just a ring with rumble strips) than the ERMA's, and the magazine on the MP-38/40 is vertical.
Continuity mistake: After Indy replaces the idol for a bag filled with sand, the position of the bag changes between frames.
Other mistake: During the truck scene, after the German soldier hanging onto the door falls down and another guy crawls over the roof, palm trees are reflected on the windshield, but wide shots show not a single tree around because the palm trees area was left behind a while ago.
Continuity mistake: In the map room, after Indy has discovered where to put the stick in, the sun rays lights the head and shoulder of a painted figure and the whole body of the figure to the right of it. A frame later the first figure is now completely lit. Too fast a change.
Audio problem: In the bar, when the man is shot in the face and burns alive he screams in pain, but he never opens his mouth.
Continuity mistake: When Belloq talks to Indy in the Well of Souls the two Arabs on the left disappear in the angles from Indy's POV.
Audio problem: When Toht walks in with Dietrich and Gobler, watch the background, you will see Dietrich's lips moving, but you cannot hear him saying anything.
Other mistake: At the beginning of movie when Indy is about to steal the gold idol, the camera does a close-up of it. The idol has been in a decaying temple for hundreds of years. but it appears shiny and new, as though just placed there. You'd expect the idol to at least be dusty or covered in jungle debris.
Revealing mistake: When Belloq's head explodes, the actor has been visibly replaced by a dummy.
Continuity mistake: During the shooting at the bar, Marion covers her ears to muffle the sound, but a frame later they are around the wall in front.
Continuity mistake: Indy climbs on a plane's wing, and a German mechanic arrives and asks him what he's doing, raising his left arm and ordering him to approach. A shot later, the arm is down.
Answer: I also remember this scene. After the ark is sealed, the camera performs a close up of the side of the crate. The stamp reads "Top Secret Army Intel 9906753 Do Not Open" This stamp is burned off just like the swastika is in the scene on the submarine, because in the eyes of God, no nation is holy or worthy enough to claim ownership of the ark. However, this final scene was cut (the burning of the stamp) from the film for a variety of unclear reasons. While it was in theaters, this scene was not included on the DVD version.
Add me to this. We saw the movie in a "pre release" version in Orlando Florida. No advance warning of the movie. We went to see another flick and at the end were "invited" to see this if we were willing to critique it afterwards. This scene was included. I also always wondered why the change.
I also remember seeing this mysterious 'burning' of the logo, most likely it was on a VHS copy of this movie. Yes, it did exist.
I saw it in former Czechoslovakia in the second half of 80's in cinema (west movies came to the east countries' cinemas years later). And I thought it was a great joke that burning out the swastika wasn't just because the Nazis are bad but because nobody is great enough to own the arc. Then after the Velvet revolution I saw the film again on TV (beginning of 90's) and said everyone around: watch it until the end, wait on the post-credit scene, there will be a surprise.
And there was a surprise. The scene was cut off! I was angry on the TV they didn't show the scene. I cannot be influenced by internet discussion or urban legend. The internet didn't exist yet.
I saw it in Portland, Oregon, and was so impressed with the message it carried, that I told friends and we went several times just to see it. Funny thing was when I mentioned it a few years ago, many people said I was a LIAR that it never happened. I could not convince anyone. It was removed because it wasn't Politically Correct. USA is a force for good, God would not burn off AMERICAN TEXT! BUT WE DID SEE IT. Thanks to our Australian eye witness, we know we did not imagine it.