Continuity mistake: The protagonists escaped from captivity and managed to return to Harry's palace. Luka decides to leave to go look for his mother. Harry seems to send him off, and he is standing in the middle of the stairs, about 4 steps below the guard. Harry at this point is in close-up; the guard is not visible, and at the next cut somehow Harry shoves him off as if he were standing directly behind him. (00:16:00)
Continuity mistake: When Aunt Sarah arrives, she dumps her luggage in the hands of Jim and then passes him to his right, leaving him between herself and the door. In the reverse shot, Jim is on the opposite side. (00:29:15)
Other mistake: When the characters go to the Himalayas, the whole time, like for 20 mins, including the confrontation scene, they are all wearing casual, short-sleeved shirts. You can see Mr. Burnish's henchmen wearing winter clothing, while the main characters don't freeze to death. They only start getting cold after a long time.
Continuity mistake: Scooby and Shaggy are lying face down on the massage table when the zombies arrive. Shaggy has his robe lowered baring the upper back, but in the close-ups you can still see the robe up covering his shoulders perfectly. (00:28:00)
Continuity mistake: Aladdin wakes up in the cave after the Vizier shoved him in. Kneeling, he picks up the lamp with his right. "This makes you Sultan?" he asks, with the lamp in his left. (00:22:50)
Other mistake: Throughout this, a running gag is that Fred can't drive stick/clutch. However, in "What's New, Scooby-Doo?" Series 2, Episode 6 "A Scooby-Doo Halloween," he yells at Shaggy that he's riding the clutch too hard at the beginning of the episode. If the Mystery Machine has a clutch mechanism, he would know how to drive stick/clutch.
Plot hole: SPOILER ALERT! During the final fight, Joey kills Frank and she reverts back to human form. Abigail tells her she's fine, because Frank was the one who turned her. However, when Frank kills Lambert he does not revert back to human form, even though Lambert was the one who turned him.
Suggested correction: Because it was too late for Frank, who had already turned, Joey hadn't.
If that were the case, then why would Abigail bother explaining to Joey why she reverted back to human form?
Continuity mistake: In the prologue, the Nazis storm the Bresson residence. The elder Professor Bresson is sitting at his desk, back turned to them. There's an open fountain pen next to him, right by a paper sheet, but when Bresson answers rather defiantly to the bad guys, the paper sheet suddenly has disappeared. (00:02:15)
Deliberate mistake: The prisoners in the dark dungeon would not be able to read the letter (to Miss Dudley from Jason Flemyng that the carrier pigeon had) or see such a clear reflection by pouring water on the stone floor and holding the letter (written backwards) by the water. The room was suddenly lighter when doing so, but it wasn't clear where the light was coming from. Also, sunlight coming through the small window would not beam straight down along the wall. (00:07:23)
Continuity mistake: Xiao Meng spent some time wrapping her father's (Professor Tao) left hand, going around his wrist/thumb and under his thumb (diagonally across his palm). When Tao was blown off the bridge and landed in the dirt, the bandage was NOT wrapped around his thumb (just around his wrist). (01:12:33 - 01:16:03)