Plot hole: When Terry gets back to her computer, after escaping from the spies and cops, the time is after 3pm New York time. If Jack actually is in Russia or Eastern Europe, wouldn't he have already gone to, and been killed at, that 5pm meeting?
Plot hole: Where did Bob find a knife to skin and clean the rabbit? And why did he leave the ears and front paws? (01:19:45)
Plot hole: If the Bird-of-Prey went to warp speed right after the whales were beamed up the ship would have already been so far away from Earth it would have been on its way back towards the sun, yet minutes later the ship is shown leaving the Earth, still at warp speed.
Plot hole: When Jeannie encounters Mr. Rooney at her house, she attacks him and calls the police. Later, the police pick her up for filing a false report. Why? Surely they would've seen signs of an intruder such as a dropped wallet on the floor and footprints in the mud right next to the house.
Suggested correction: Without knowledge of what happened when the police visited, it's impossible to call this a plot hole. It might be that the police knocked on the door, Jeannie answered and explained that by the time they got there the intruder had gone. She could have got angry at them like she did on the phone. Maybe they arrested her there and then, without entering the house or searching the grounds (for someone they'd just be told was no longer there). Who knows? Unlikely sure, but not impossible.
Plot hole: The house has no pool, even though Walter tells the homeowner she has the best kept pool he's ever seen.
Suggested correction: When Walter tells the homeowner that the pool is well-kept, she lets out a groan that suggests that it's a flood.
I think it was because the lady who owned the house said her husband was deported out of the country because it turned out that during the war her husband was Hitler's pool boy, and she didn't know it. I would assume that he would keep a nice pool and since her husband was gone, she needed to sell the house.
Plot hole: Chelsea says that when her deceased father gave her one of his paintings (now missing), he wrote an inscription to her on the back. She says she cannot prove that he actually did this other than he noted it in his journal and she does not know where the journal is. However, when Chelsea's father presented the painting to her on her 8th birthday, there were at least 100 adults present at her party who witnessed him giving her the painting, writing the inscription, and signing his name on the back of the canvas which was displayed to the guests. Any number of these people could be contacted and corroborate her claim.