Continuity mistake: When Anakin and Padmé are walking towards her ship while discussing the situation, as happens with surprising frequency, Rex, walking behind them, is missing his kama (the kilt). (00:04:35)
Continuity mistake: When Ahsoka suggests that Chairman Papanoida's daughters might be being held on the Trade Federation ship blockading Pantora, she refers to it as a planet. "Trespass" established that Pantora is a moon. (00:06:47)

Continuity mistake: When Baron Papanoida walks into Jabba's court, his half-cape is missing. (00:10:24)
Answer: I would say his death in Phantom Menace was more of a controversy. He was a fan favorite character from the movie, and his fight scene largely regarded as the best part of the movie. It was more he was brought back to please the Star Wars fans and few, if any, had problems with it.
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