Brother's Keeper (1 & 2) - S1-E1
Visible crew/equipment: When Leon is walking down the street, right before Crockett jumps in his car, the camera crew are visible in the shop windows the entire length of the scene, moving along with Leon.
When Irish Eyes Are Crying - S3-E1
Visible crew/equipment: During Crockett & Tubbs' first meeting with arms dealer Max Klizer, a boom mic can be seen at the bottom of the screen in one shot.
Brother's Keeper (1 & 2) - S1-E1
Visible crew/equipment: In the scene where Crockett and Tubbs first meet at the deal, after the cops bust the deal too early, Tubbs steals Crockett's boat to get away. As he's driving the boat away, you see a second person kneeling down in the back of the boat, most likely a crew member. Very obvious.
Visible crew/equipment: When Crockett and Tubbs are being escorted by boat to Bramlette's hideout by his wife Cassie, in a shot from the riverbank you see that Don Johnson and Philip Michael Thomas have been replaced by doubles. Although their backs are to the camera, it's plain to see that they look nothing like the actors who they're replacing. Especially Crockett's.
Visible crew/equipment: At the beginning of the show where three guys take a ride in a convertible and one of them spits at a driver in a truck, pay close attention: the cameraman is visible in the reflection of the convertible, along with two crew members.
Down for the Count (2) - S3-E13
Visible crew/equipment: When Crockett, Tubbs and Switek enter the mall at the end of the episode to prevent the hit on Guzman, Philip Michael Thomas has been replaced with an older looking stunt double who tries his best not to have his face in shot by immediately taking cover. In the next scenes in the mall, Tubbs has disappeared completely.