Other mistake: In Shepard's apartment, there is a fresh pineapple and other fruit in his kitchen. This despite him having been in Atlantis for several months. This later turns out to be an artificial reality, but that should've been a big hint.
Other mistake: McKay and Jackson enters a room and runs into 2 armored figures, Jackson eventually reveals that they are empty suits, however in every shot shot from behind the suits, the suits are constantly moving, as if they are hanging on strings.
Answer: Those are actually suits that protect from hazardous chemicals. They are cheaper for the prop department and look nearly the same as biohazard suits. A real biohazard suit would indeed have a helmet that seals to the neck.
Grumpy Scot