Vampire Bats and Scaredy Cats - S2-E2
Continuity mistake: When Lisa's uncle shows her her grand-father's picture, it changes from one shot to another.
Hang in There, Scooby-Doo - S2-E3
Continuity mistake: In the cavern, Scooby and Shaggy dig holes in the ground. The rest of the group notice a truck driven by the Pterodactyl going toward them. Discs and cassettes fall from it. The shot later, the stones behind them have disappeared and the pile of discs have a different shape.
Hang in There, Scooby-Doo - S2-E3
Continuity mistake: The pile of bootleg records suddenly gets bigger after Velma's shown holding some of them.
Vampire Bats and Scaredy Cats - S2-E2
Other mistake: When the Mystery Company find a torn paper in a coffin, it is written exo-6 and something else. They find later that exo is the first part of exotic. The way the paper was torn, you should be able to see the lower part of the missing letters.
The Creepy Heap from the Deep - S2-E8
Audio problem: When speaking about the hidden beauty parlor in the submarine Velma's voice comes from Daphne's mouth briefly.
The Creepy Heap from the Deep - S2-E8
Continuity mistake: Captain Clement's hair and beard briefly go back to his natural grey when he's still in his zombie makeup during the submarine chase.
The Chiller Diller Movie Theater - S2-E4
Continuity mistake: Scooby Dum's collar goes from its usual red to yellow briefly in one shot on the train.
The Chiller Diller Movie Theater - S2-E4
Plot hole: Given Jim Moss, the studio chief, is already on the train, it makes no sense for him to have been in the coffin. That and how he managed to slip into it without being seen by the conductor or anyone else.
The Ozark Witch Switch - S2-E6
Plot hole: It's never explained how any of the Hatfields could've left a pile of sawdust at their cabin.