Plot hole: When Dawn enters Clark's body, she slaps Chloe in the face with the back of the hand, and Chloe goes flying. A few minutes later, we see Chloe get up and say that she's fine. Getting backhanded by Clark would make you very far from fine. First of all, Clark can knock someone out just by tapping them on the forehead, as seen in a previous episode. Second, Dawn has no idea of Clark's powers, so she would have used way more force than she actually needed to. The amount of force inflicted from the attack should have caused fatal injuries to Chloe. There's not even a cut or bruise or anything.
Smallville (2001)
2 plot holes in Spirit
Martha Kent: Clark? What are you still doing out here?
Clark Kent: Well, I'm still doing my chores.
Martha Kent: Well, you usually finish those in about two minutes. How is it that I drove to Metropolis, attended the Children's Foundation dinner, and made it back before you finished?
Clark Kent: Because I'm doing them the normal way.
Question: Throughout the series, people mutate fairly soon after their exposure to kryptonite. Is it ever explained how Lana has managed to wear a piece of kryptonite around her neck for 12 years and not change?
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Answer: The kryptonite only creates mutations when it reacts with the environment and an individual. Remember, the FDA and several environmental groups did check out Smallville after the meteor shower, but found no danger in the rocks. Obviously they're not always emitting mutating rays, or all the flora and fauna of the surrounding area would be horribly mutated.
Phoenix