Continuity mistake: Jonathan reveals the kryptonite to Clark/Dawn and Clark starts to react to it. Because of the kryptonite Clark drops the tiara he took from Chloe and it hits the floor near Chloe's hand. Then, just before Dawn is forced out of Clark's body, the tiara has slid several feet away and is now close to the furnace. Clark turns his attention to Chloe, she is faking an injury at this point, but now the tiara has moved back to be near her hand.
Continuity mistake: Jason accesses Lex's computer and Lex catches him. After a discussion on an email Jason found Lex says "Burying ladies in the backyard isn't exactly a hobby of mine, Jason." Lex then just stands there staring at Jason. During their stare down the camera jumps back behind Lex and then back to behind Jason. During these camera changes the lighting on the left side of Lex's face changes. When the camera is behind Jason, Lex's left side is dark. When the cameras is behind Lex, Lex's left side is lit up.
Answer: The kryptonite only creates mutations when it reacts with the environment and an individual. Remember, the FDA and several environmental groups did check out Smallville after the meteor shower, but found no danger in the rocks. Obviously they're not always emitting mutating rays, or all the flora and fauna of the surrounding area would be horribly mutated.
Phoenix