Jeepers It's the Creeper - S2-E3
Other mistake: There is a scene where the gang is the home of the Bank President, just after dropping off the injured bank guard. At one point the Bank President is standing behind an end table of some kind with a lamp on it. Even though there is nothing underneath the table to block your view you cannot see the lower part of the Bank President's leg. It looks like it has been cut off.
Don't Fool With a Phantom - S2-E8
Other mistake: When the wax phantom appears behind Scooby and Shaggy the man who supposedly is impersonating him in the suit is in clear sight directly behind Fred Daphne and Velma.
Chosen answer: A ghost wouldn't have to keep any food in the fridge - they don't need to eat. So it is one thing that proves the ghost is not a ghost.