Visible crew/equipment: When Mulder and Scully enter the abandoned mine through a doorway, the viewer can see at right in the distance a number of people sitting on a wall, and one crouching in front of the wall with what looks like a dog. They are sitting still, but there is still movement there. (00:16:00)
Clyde Bruckman's Final Repose - S3-E4
Continuity mistake: Clyde Bruckman commits suicide by placing a plastic bag over his head until he asphyxiates. However, when Mulder and Scully first discover him you can see in the shot just before Scully holds his hands that there is no plastic bag around his head (may only be visible in widescreen format). (00:42:55)
Clyde Bruckman's Final Repose - S3-E4
Visible crew/equipment: When the agent says "I'm Kline, this is Havez" the boom mic is by the light on the ceiling. (00:04:15)
Visible crew/equipment: When Scully says "This is rumor panic" you see the camera shadow following her on the lower left side of screen. (00:18:20)
Continuity mistake: When Mulder experiences his near-death trance state his body is lying, apparently lifeless, in a star spangled sky. As the camera tracks in on him the toes on his right foot twitch, just after Deep Throat begins to speak. The foliage covering his chest also changes position between shots. In the wide shot he is covered up to the armpits. But the first close up shows his chest is exposed. Then in later close ups it is covered again. (00:14:25)
Continuity mistake: During the autopsy, Scully says that the date is August 29. The two previous episodes were set in September. (00:09:50)
Continuity mistake: When Skinner walks into the cafe (the time he gets shot) another man is just walking out, leaving a table with a used glass and coffee cup. The waitress is in the back, getting Skinner a cup of coffee (she couldn't have cleaned the other table yet), but when we look over Skinner's shoulder you can see that the other table is cleared and has a clean coffee cup (turned upside down) on it.
Deliberate mistake: It's completely impossible that the sound of the tape(that sounds like "Fox Maytrink") is in fact "Your time has come,Killer".
Clyde Bruckman's Final Repose - S3-E4
Character mistake: Clyde Bruckman says that the Big Bopper won a coin toss that put him on the plane that crashed and killed him along with Buddy Holly and Ritchie Valens. The person who actually won the coin toss was Ritchie Valens.
Factual error: In the footage's right-hand side, we can see the Church of the Covenant's facade, which is located at East 42nd St. New York. However, the subtitle erroneously states 46th St. (00:09:40)
Revealing mistake: When Mulder finds the Japanese doctor dead on the floor of the train bathroom, the man's eyes are open. Just before the shot cuts to the girl and boy at the door, he closes his eyes.
War of the Coprophages - S3-E12
Factual error: In the scene where Mulder, the police officer and the doctor are in the doctor's room, the time on the clock reads 8:40. The doctor announces that he going to the bathroom. The scene cuts to him in the bathroom and then back to the doctor's office with Mulder and the police officer. Another cop comes in and says, "Come to the bathroom, something's happened." The clock still reads 8:40.
Continuity mistake: If you watch closely you can see that Mulder runs the key card through the door scanner the wrong way, scanning nothing but plastic. (00:25:40)
Revelations - S3-E11
Factual error: After the agents meet with Kevin's father in the mental institute, Scully lists the medication that he is on: haloperidol, loxapine, and chlorpromazine make sense, but the fourth medication - LARGACTIL - is in error. Not only is it a brand-name of chlorpromazine, but it is not available in the USA, it is a CANADIAN drug. (00:36:10)
Continuity mistake: When Scully and Mulder first visit John Mostow he says that he drew all the pictures of Gargoyles, which would have been a pretty good act considering he was in a strait jacket and would not have been allowed to have paper and drawing materials anyway. (00:07:30)
Visible crew/equipment: While Fox is fighting the agent in the underground garage you see a crew person on the right side of screen for a split second. (00:38:55)
Continuity mistake: General Callahan tells Mulder that the man he saw in his office said his name, but all he said was, "Your time has come, killer". (00:13:10 - 00:17:25)
Continuity mistake: When Senator Richard Matheson tells Mulder about the four Japanese Nationals had been murdered, he says that the murders had occurred several weeks ago. But when Mulder brings Scully up to speed a scene or two later, he tells her that someone must have been able to identify the four doctors who were performing the autopsy because they were murdered YESTERDAY. (00:30:05 - 00:33:10)
Continuity mistake: General Callahan, who is referred to as General Callahan throughout the episode by Mulder, gets called "Lieutenant" Callahan in the last scenes in the steam-room, while lying on the floor.
Answer: As he stated many times throughout the series, Mulder needed Scully to be sober and skeptical. Whenever Scully's skepticism wavered and she started questioning her own rationality, Mulder would try to restore her sense of skepticism, because he needed her to be clear-thinking.
Charles Austin Miller