Factual error: The Nimitz's position is not indicated, but most probably it is somewhere south or southwest of Pearl Harbour. Similarly, it is not indicated where the Senator's boat is sailing, but it should be somewhere west or southwest of Pearl Harbour. The two Japanese Zeroes encounter the boat and strafe it, but their flight seems to indicate they would be headed toward Pearl Harbour (or at least some populated island surely) which would indicate they were headed north or northeast. If that were the case, they certainly flew in a large circle around the island chain, which seems unrealistic in terms of fuel, distance, and reconnaissance use. Also they would have had to have flown between the Nimitz and the pleasure craft then headed back toward Pearl Harbour, which makes even less sense in the movie.

The Final Countdown (1980)
21 mistakes
Directed by: Don Taylor
Starring: Kirk Douglas, Martin Sheen, Katharine Ross, James Farentino
Captain Yelland: If the United States falls under attack our job is to defend her in the past, present and future.
Lasky: And after that?
Captain Yelland: After that, we take our orders from the Commander in Chief of the United States Armed Forces.
Lasky: Franklin Delano Roosevelt?
Trivia: For the memorable confrontation between two Japanese Mitsubishi A6M Zeroes and two American F-14 Tomcats, a trial flyby was close enough that powerful air turbulence from the passing jets violently threw both Zeroes out of control for a few seconds, like toys. The lead Zero pilot even lost his wristwatch and communications headset, which were vacuumed out of the open canopy. Out of radio contact for several seconds, the condition of the Zero pilots was unknown. Camera angles and distances between all the aircraft were modified so as not to further endanger the Zeroes for the final take as seen in the film.
Question: After going through the first storm they lose track of the incoming plane they set the barricade up for. The after a minute the plane lands and the pilot is brought in by stretcher. The commander looks at the young inexperienced pilot like something was wrong. Why did the director choose to do that? I think the pilot aged but they took it out of the movie for time or something else. Any ideas?
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Answer: First, he had a look of concern for the young pilot under his command. Second, he is also confused as to what exactly happened. They believe it was a first strike weapon, that the world was ending.