Continuity mistake: When the Marines first enter the reactor room, the "Mission Time" readout on the shoulder mounted cameras jumps backwards and forwards in time with every cut. (00:54:10)
Continuity mistake: In the sequence when the APC is fleeing the hive, and the alien punches a hole through the windshield to get to Ripley. The hole disappears in the next shot when the light reflects off of the glass. (01:07:05)
Continuity mistake: When Ripley and the Queen fall into the airlock, look closely at the Queen's tail. It seems that the sharp end of it is broken off, or missing. Later on in that scene it is back. (02:10:25 - 02:11:25)
Continuity mistake: During the scene where Ripley is trying to break the window with a chair, there is a scuff mark on it before she hits it. It goes away and comes back. (01:32:15)
Suggested correction: The view from Ripley's side is looking up at the window and from the other side level where there are reflections at the same height (using Ripley as a reference) of the scuffs. There is no way to tell if the scuffs are there or not.
The Director's Cut (and maybe even on the theatrical version) on the 2010 Blu-ray removes the scratches, so I assume they were not supposed to be there initially.
Continuity mistake: You may need slo-mo to see this: towards the end of the film, when Ripley is going down in the elevator to save Newt, pay close attention to the indicator screen counting off the floor numbers as they pass by. It goes floor 8, 7, 6 then 7 again and then 5. (01:51:20)
Continuity mistake: Director's cut: When the autoguns were mowing down the army of Aliens coming through the service tunnels, there should have been enough acid blood being sprayed out to melt a massive hole in the tunnel. But the acid has no effect at all on the tunnel walls.
Continuity mistake: In the end of the film, when Ripley pulls the Alien queen down in to the hatch we can see that the bulb on top of the machine cracks but when they are lying on the hatch the bulb is whole. (02:05:10)
Continuity mistake: There are many holes in the 'squad structure' once the marines arrive at Hadley's Hope. Gorman calls up 1st Squad (comprised of Apone, Vasquez, Crowe and Hudson) to approach the colony first. They do. But, if you look closely, there are other marines present. When they arrive at the door Apone goes straight to the console, Hudson holds back to our left and Crowe rests in the background on the right of the screen. Apone then calls Hudson up to do a bypass. If you look closely as Hudson runs up to the console you will see Frost in the background, he steps up to the left of Crowe (his left) and on the left of the screen, you will see Wierzbowski crouch with his flamethrower, slightly obscured by Vasquez (look between her legs). Then 2nd squad is called up. It is comprised of Hicks, Dietrich, Drake, Frost and Wierzbowski. Watch the shot of Vasquez entering the lock and you will see Frost standing roughly where he was when the 1st Squad ran up. Clearly the original scene had all the marines descend on the North Lock simultaneously. The confusion continues when Gorman, Ripley, Burke and Bishop enter the South Lock. They meet up with Hicks' squad yet Dietrich and Wierzbowski are curiously absent.
Continuity mistake: When remote sentries A and B start firing at the aliens in the tunnel, the display on A shows 500 rounds before they start firing. However, both remotes A and B had been previously test-fired by Vasquez and should show lower counts.
Continuity mistake: In the scene close to the end of the film when Ripley is getting the weapons ready in the 2nd drop ship to rescue Newt, she slams in a new ammo clip into the pulse rifle and the counter reads 95 rounds. Moments later when she is in the elevator descending into the aliens lair the counter is reading 42 rounds, even though she hasn't fired a shot.
Continuity mistake: During the Cargo Loader vs. Queen fight, Ripley grabs the Queen and it closes around her neck. In the next shot it is closed around its head. It changes extremely quickly; therefore it couldn't have changed position.
Continuity mistake: At the beginning of Aliens, when the door is cut through, the markings and lettering on the transparent cover of Ripley's suspended animation pod are different from those that were on it when she was asleep at the end of Alien.
Continuity mistake: When Bishop is impaled by the Queen alien he spews android fluid/juice all over his chin. In a subsequent shot his chin is clean and he is spewing fluid again. The following shot his chin is once again covered. (02:23:30)
Continuity mistake: When the loader is dragged into the airlock, the yellow caution light shatters. The light is fully intact in the next shot.
Continuity mistake: When Ripley and the marines arrive on the planet, it is pouring with rain. But a minute after being inside the buildings, they are all dry.
Continuity mistake: Director's Cut: During the briefing scene on board of the Sulaco, Lt. Gorman begins the briefing. He gets interrupted by Hudson. Before the shot changes to Hudson, you can see Gorman standing straight in front of the marines and looking straight ahead. In the shot from Hudson, you can see Gorman looking to the right to face Hudson. He still should be looking straight ahead. (00:32:00)
Continuity mistake: In the APC, Ripley puts on a headset to talk to Hudson. When the fighting is underway, she turns to Gorman to "get them out of there." Headset's gone. Next cut to, headset's back for Gordan to pull it off of her. (01:15:30)
Continuity mistake: As the marines first enter the med labs, Drake at the front, there are some neon tubes hanging from the ceiling that slowly rotate to face the camera. As the angle changes and Drake goes round a corner, the neon tubes rotate to face where the camera previously was again in the background.
Continuity mistake: When Gorman and Burke come to see Ripley to persuade her to come to LV-426, Burke hands her a plastic card so she can call him if she changes her mind. At this point Ripley lights a cigarette. The scene then cuts to a view of the whole room, and Ripley can be seen lighting the cigarette again. (00:15:15)
Continuity mistake: There are 2 squads of marines in the film, 9 in total. (Not including Gorman or Bishop, and also not including Ferro and Spunkmeyer who stay in the dropship and do not enter the compound.) Squad one is Apone, Vasquez, Hudson, Crowe, Wierzbowski. Squad 2 is Hicks, Frost, Dietrich, Drake. But as the marines enter the compound you clearly see 5 marines running up to the door, and shortly after, Apone shouts for second squad to move up. As they move look closely and you will see 5 more moving up. 5+5=10, who is the mystery marine?