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Other mistake: At Skull Rock, when Peter Pan mimics Captain Hook's voice while talking to Smee, just as he says, "Oh, and one more thing," note the handle of Peter's dagger. The animation of his dagger is bizarre, the handle's grip is separated from its pommel, as if it's going through Peter's forearm. (00:41:50)
Chosen answer: He's too much of a bumbler and too cheery (for example when he tells the crew "good morning" and they wanted to know why it's so good.) They probably also see him as a fool and brown-noser since he's always trying to make Hook happy. To the crew he's just Hook's assistant and not a real pirate at heart.
Bishop73