Continuity mistake: When Booth is caught with the egg at his house, Hartley gives a "I know who you really are" speech to him and during this time, he's drinking from a clear glass. He hands Booth the glass as he is walking around. Immediately after handing Booth the glass, you can see Hartley has another glass. Then takes the glass from booth shortly after. (00:17:03)
Continuity mistake: In the Argentinian jungle, when Booth is handcuffed to the tree the handcuff around his left wrist has the single bar facing up, but when Booth makes the comment, "Super fun time, guys," the double bar is facing up. Later on the yacht, when Booth tells Hartley and Black the "funny story" about Das, in the flashback the handcuff around Booth's right wrist also turns itself the opposite way. (01:41:10 - 01:45:00)
Continuity mistake: When Booth first arrives in Bali on the boat he's wearing a brightly patterned tropical shirt, and between shots the shirt's pattern completely changes, though it's the same style of shirt, then it changes back again. (00:13:40)
Continuity mistake: When Hartley arrives at the Russian prison, as he's led down the corridor the handcuffs are around both his wrists with the double bars facing out, chained at the center, but when the handcuffs are removed in his cell note the handcuff is on the opposite way around his right wrist. (00:22:20)